RPS-BLAST 2.2.16 [Mar-25-2007]
Database: 95pdb09Oct16_0000; 95pdb09Oct16_0001; 95pdb09Oct16_0002;
95pdb09Oct16_0003
66,450 sequences; 15,983,541 total letters
Searching..................................................done
Query= AAS81992.1 tthe0 AAS81992.1 GIB00176CH01 "sulfite
dehydrogenase"
(220 letters)
Score E
Sequences producing significant alignments: (bits) Value
2biiA [x.x.x] NITRATE REDUCTASE [NADPH] 115 2e-28
2a9cA [x.x.x] SULFITE OXIDASE 104 3e-25
2a9dB [x.x.x] SULFITE OXIDASE 98 2e-23
2a9aB [x.x.x] SULFITE OXIDASE 93 7e-22
2a9dA [x.x.x] SULFITE OXIDASE 88 3e-20
2bihA [x.x.x] NITRATE REDUCTASE [NADPH] 69 1e-14
2a9aA [x.x.x] SULFITE OXIDASE 60 6e-12
2ca3A [x.x.x] SULFITE\:CYTOCHROME C OXIDOREDUCTASE SUBUNIT A 55 2e-10
2a9bA [x.x.x] SULFITE OXIDASE 55 2e-10
2a99A [x.x.x] SULFITE OXIDASE 52 2e-09
2c9xA [x.x.x] SULFITE\:CYTOCHROME C OXIDOREDUCTASE SUBUNIT A 36 1e-04
>2biiA [x.x.x] NITRATE REDUCTASE [NADPH]
Length = 415
Score = 115 bits (288), Expect = 2e-28
Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 31/225 (13%)
Query: 20 RVPPGQFVT--ERFPILTYGETPKVAK---EAWRLEVTGLVETPLVLTYEDLLAR-PQVE 73
++ F+T + +G P V W + + G+VETP + D++ +
Sbjct: 10 KLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEGMVETPYKIKLSDIMEQFDIYS 69
Query: 74 LTRDFHCVTRWSRLD------------------VTWKGVRTRDLXXXXXXXXXXXXXXXE 115
C + W G D+ E
Sbjct: 70 TPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPSKRARFVWME 129
Query: 116 S-----YGGYTTNXXXXXXXXXXXXX--AHTLFGKPLPPERGGPVRLLVPHLYAWKSAKW 168
G Y T A+ G+ L P+ G P+R+++P + +S KW
Sbjct: 130 GADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKW 189
Query: 169 VRRIVLLDHLELGFWERLGYHWRGDPWKEERFQEGPVPAHRIRFA 213
++++V+ D ++ E + R+A
Sbjct: 190 LKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYA 234
>2a9cA [x.x.x] SULFITE OXIDASE
Length = 359
Score = 104 bits (259), Expect = 3e-25
Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 37/216 (17%)
Query: 22 PPGQFVTER-------FPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLAR-PQVE 73
PP + + ER F + P V ++RL V G L L+ +L +R P+ E
Sbjct: 12 PPAELLAERFLTPNELFFTQNHLPVPAVEPSSYRLRVDGPGGGTLSLSLAELRSRFPKHE 71
Query: 74 LTRDFHCVTRWSRLD------------------VTWKGVRTRDLXXXXXXXXXXXXXXXE 115
+T C W G R RD+
Sbjct: 72 VTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHV 131
Query: 116 SY---------GGYTTNXXXXXXXXXXXXX--AHTLFGKPLPPERGGPVRLLVPHLYAWK 164
+ Y + A+ + G LP + G PVR++VP + +
Sbjct: 132 CFEGLDADPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGAR 191
Query: 165 SAKWVRRIVLLDHLELGFWERLGYHWRGDPWKEERF 200
S KW+RR+ + W++ Y +
Sbjct: 192 SVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTV 227
>2a9dB [x.x.x] SULFITE OXIDASE
Length = 359
Score = 97.9 bits (243), Expect = 2e-23
Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 32/214 (14%)
Query: 19 PRVPPGQFVT--ERFPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLAR-PQVELT 75
+ +F+T E F + P V ++RL V G L L+ +L +R P+ E+T
Sbjct: 14 AELLAERFLTPNELFFTRNHLPVPAVEPSSYRLRVDGPGGRTLSLSLAELRSRFPKHEVT 73
Query: 76 RDFHCVTRWSRL------------------DVTWKGVRTRDLXXXXXXXXXXXXXXXESY 117
C W G R RD+ +
Sbjct: 74 ATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCF 133
Query: 118 GG---------YTTN--XXXXXXXXXXXXXAHTLFGKPLPPERGGPVRLLVPHLYAWKSA 166
G Y + A+ + G LP + G PVR++VP + +S
Sbjct: 134 EGLDADPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSV 193
Query: 167 KWVRRIVLLDHLELGFWERLGYHWRGDPWKEERF 200
KW+RR+ + W++ Y +
Sbjct: 194 KWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTV 227
>2a9aB [x.x.x] SULFITE OXIDASE
Length = 359
Score = 93.0 bits (230), Expect = 7e-22
Identities = 43/226 (19%), Positives = 71/226 (31%), Gaps = 32/226 (14%)
Query: 19 PRVPPGQFVT--ERFPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLAR-PQVELT 75
+ +F+T E F + P V ++RL V G L L+ +L +R P+ E+T
Sbjct: 14 AELLAERFLTPNELFFTRNHLPVPAVEPSSYRLRVDGPGGGTLSLSLAELRSRFPKHEVT 73
Query: 76 RDFHCVTRWSRLD------------------VTWKGVRTRDLXXXXXXXXXXXXXXXESY 117
C W G R RD+ +
Sbjct: 74 ATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCF 133
Query: 118 ---------GGYTTN--XXXXXXXXXXXXXAHTLFGKPLPPERGGPVRLLVPHLYAWKSA 166
Y + A+ + G LP + G PVR++VP + +S
Sbjct: 134 EGLDADPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSV 193
Query: 167 KWVRRIVLLDHLELGFWERLGYHWRGDPWKEERFQEGPVPAHRIRF 212
KW+RR+ + W++ Y + PA +
Sbjct: 194 KWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELP 239
>2a9dA [x.x.x] SULFITE OXIDASE
Length = 369
Score = 87.6 bits (216), Expect = 3e-20
Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 35/215 (16%)
Query: 19 PRVPPGQFVT--ERFPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLAR-PQVELT 75
+ +F+T E F + P V ++RL V G L L+ +L +R P+ E+T
Sbjct: 27 AELLAERFLTPNELFFTRNHLPVPAVEPSSYRLRVDGP---TLSLSLAELRSRFPKHEVT 83
Query: 76 RDFHCVTRWSRL------------------DVTWKGVRTRDLXXXXXXXXXXXXXXXESY 117
C W G R RD+ +
Sbjct: 84 ATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCF 143
Query: 118 GG---------YTTNXXXXXXXXXXXXX--AHTLFGKPLPPERGGPVRLLVPHLYAWKSA 166
G Y + A+ + G LP + G PVR++VP + +S
Sbjct: 144 EGLDADPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSV 203
Query: 167 KWVRRIVLLDHLELGFWERLGYHWRGDPWKEERFQ 201
KW+RR+ + W++ Y +
Sbjct: 204 KWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVD 238
>2bihA [x.x.x] NITRATE REDUCTASE [NADPH]
Length = 453
Score = 68.8 bits (167), Expect = 1e-14
Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 30/228 (13%)
Query: 15 EGMDPRVPPGQFV-TERFPILTYGETPKVAK---EAWRLEVTGLVETPLVLTYEDLLAR- 69
+ G + +G P V W + + G+VETP + D++ +
Sbjct: 44 PPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEGMVETPYKIKLSDIMEQF 103
Query: 70 PQVELTRDFHCVTRWSRLD------------------VTWKGVRTRDLXXXXXXXXXXXX 111
C + W G D+
Sbjct: 104 DIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPSKRARF 163
Query: 112 XXXESY-----GGYTTNXXXXXXXXXXXXX--AHTLFGKPLPPERGGPVRLLVPHLYAWK 164
E G Y T A+ G+ L P+ G P+R+++P + +
Sbjct: 164 VWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGR 223
Query: 165 SAKWVRRIVLLDHLELGFWERLGYHWRGDPWKEERFQEGPVPAHRIRF 212
S KW++++V+ D ++ E + R+
Sbjct: 224 SVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERY 271
>2a9aA [x.x.x] SULFITE OXIDASE
Length = 371
Score = 60.1 bits (144), Expect = 6e-12
Identities = 42/211 (19%), Positives = 67/211 (31%), Gaps = 37/211 (17%)
Query: 22 PPGQFVTER-------FPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLAR-PQVE 73
PP + + ER F + P V ++RL V G L L+ +L +R P+ E
Sbjct: 24 PPAELLAERFLTPNELFFTRNHLPVPAVEPSSYRLRVDGPGGGTLSLSLAELRSRFPKHE 83
Query: 74 LTRDFHCVTRWSR------------------LDVTWKGVRTRDLXXXXXXXXXXXXXXXE 115
+T C W G R RD+
Sbjct: 84 VTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHV 143
Query: 116 SYGGY-----------TTNXXXXXXXXXXXXXAHTLFGKPLPPERGGPVRLLVPHLYAWK 164
+ G + A+ + G LP + G PVR++VP + +
Sbjct: 144 CFEGLDADPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGAR 203
Query: 165 SAKWVRRIVLLDHLELGFWERLGYHWRGDPW 195
S KW+RR+ + W++ Y
Sbjct: 204 SVKWLRRVAVSPDESPSHWQQNDYKGFSPCV 234
>2ca3A [x.x.x] SULFITE\:CYTOCHROME C OXIDOREDUCTASE SUBUNIT A
Length = 373
Score = 55.1 bits (131), Expect = 2e-10
Identities = 39/196 (19%), Positives = 62/196 (31%), Gaps = 28/196 (14%)
Query: 20 RVPPGQFVTERFPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLAR-PQVELTRDF 78
P F G ++ +A+RLE+ G V TPL L+ +DL P E+
Sbjct: 46 ITPNDAFFVMYH---LAGIPLEIDPDAFRLEIKGKVGTPLSLSLQDLKNDFPASEVVAVN 102
Query: 79 HCV----------------TRWSRLDVTWKGVRTRDLXXXXXXXXXXXXXXXES------ 116
C + + W+GV + +
Sbjct: 103 QCSGNSRGFVEPRVGGGQLANGAMGNARWRGVPLKAVLEKAGVQAGAKQVTFGGLDGPVI 162
Query: 117 --YGGYTTNXXXXXXXXXXXXXAHTLFGKPLPPERGGPVRLLVPHLYAWKSAKWVRRIVL 174
+ A+++ G LP G P+RL+VP Y K + I +
Sbjct: 163 PETPDFVKALSIDHATDGEVMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITV 222
Query: 175 LDHLELGFWERLGYHW 190
+D GFW + Y
Sbjct: 223 IDKEFDGFWMKTAYRI 238
>2a9bA [x.x.x] SULFITE OXIDASE
Length = 372
Score = 55.1 bits (131), Expect = 2e-10
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 29 ERFPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLAR-PQVELTRDFHCVTRWSRL 87
E F + P V ++RL V G L L+ +L +R P+ E+T C
Sbjct: 39 ELFFTQNHLPVPAVEPSSYRLRVDGPGGGTLSLSLAELRSRFPKHEVTATLQCAGNRRSE 98
Query: 88 DVTWKGV 94
+ V
Sbjct: 99 MSRVRPV 105
>2a99A [x.x.x] SULFITE OXIDASE
Length = 372
Score = 51.7 bits (122), Expect = 2e-09
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 14 PEGMDPRVPPGQFVT-ERFPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLAR-PQ 71
E + E F + P V ++RL V G L L+ +L +R P+
Sbjct: 23 AEPPAELLAERFLTPNELFFTRNHLPVPAVEPSSYRLRVDGPGGGTLSLSLAELRSRFPK 82
Query: 72 VELTRDFHCVTRWS 85
E+T C
Sbjct: 83 HEVTATLQCAGNRR 96
>2c9xA [x.x.x] SULFITE\:CYTOCHROME C OXIDOREDUCTASE SUBUNIT A
Length = 373
Score = 35.7 bits (80), Expect = 1e-04
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 20 RVPPGQFVTERFPILTYGETPKVAKEAWRLEVTGLVETPLVLTYEDLLA-RPQVELTRDF 78
P F G ++ +A+RLE+ G V TPL L+ +DL P E+
Sbjct: 46 ITPNDAFFVRYHLA---GIPLEIDPDAFRLEIKGKVGTPLSLSLQDLKNDFPASEVVAVN 102
Query: 79 HCV----------------TRWSRLDVTWKGVRTRDL 99
C + + W+GV + +
Sbjct: 103 QCSGNSRGFVEPRVGGGQLANGAMGNARWRGVPLKAV 139
Database: 95pdb09Oct16_0000
Posted date: Oct 27, 2009 4:27 PM
Number of letters in database: 15,983,541
Number of sequences in database: 66,450
Lambda K H
0.319 0.130 0.373
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 66450
Number of Hits to DB: 14,329,361
Number of extensions: 817440
Number of successful extensions: 9969
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 4748
Number of HSP's successfully gapped: 297
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)