RPS-BLAST 2.2.16 [Mar-25-2007]
Database: 95pdb09Oct16_0000; 95pdb09Oct16_0001; 95pdb09Oct16_0002;
95pdb09Oct16_0003
66,450 sequences; 15,983,541 total letters
Searching..................................................done
Query= AAS82142.1 tthe0 lysR.1 GIB00176CH01 "transcriptional
regulatory protein, lysR family"
(285 letters)
Score E
Sequences producing significant alignments: (bits) Value
1bi3A [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR 56 1e-10
1c0wA [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR 56 2e-10
1b9nA [a.4.5 - b.40.6 - b.40.6] PROTEIN (MODE) 50 7e-09
1b9mB [a.4.5 - b.40.6 - b.40.6] PROTEIN (MODE) 49 2e-08
1b9nB [a.4.5 - b.40.6 - b.40.6] PROTEIN (MODE) 46 1e-07
1b9mA [a.4.5 - b.40.6 - b.40.6] PROTEIN (MODE) 44 7e-07
1bi2A [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR 42 2e-06
1bi1A [x.x.x] DIPHTHERIA TOXIN REPRESSOR 41 3e-06
1c0wC [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR 38 4e-05
3df8A [x.x.x] POSSIBLE HXLR FAMILY TRANSCRIPTIONAL FACTOR 37 6e-05
1a40A [x.x.x] PHOSPHATE-BINDING PERIPLASMIC PROTEIN PRECURSOR 37 7e-05
3e6mF [x.x.x] MARR FAMILY TRANSCRIPTIONAL REGULATOR 37 7e-05
1cy0A [e.10.1] DNA TOPOISOMERASE I 36 1e-04
3bj6B [x.x.x] TRANSCRIPTIONAL REGULATOR, MARR FAMILY 36 1e-04
1biaA [x.x.x] BIRA BIFUNCTIONAL PROTEIN[MASQUE : MEMB(X) 45 / CO... 36 1e-04
3cjnA [x.x.x] TRANSCRIPTIONAL REGULATOR, MARR FAMILY 36 1e-04
3e6mB [x.x.x] MARR FAMILY TRANSCRIPTIONAL REGULATOR 36 1e-04
1dtr- [x.x.x] DIPHTHERIA TOXIN REPRESSOR 36 1e-04
1a54A [c.94.1] PHOSPHATE-BINDING PROTEIN 35 2e-04
1ddnA [a.4.5 - a.76.1] DIPHTHERIA TOX REPRESSOR 35 2e-04
1bi3B [a.4.5 - a.76.1] DIPHTHERIA TOXIN REPRESSOR 35 2e-04
2bv6A [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA 35 2e-04
1cy8A [e.10.1] DNA TOPOISOMERASE I 35 3e-04
1c0wB [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR 35 3e-04
1bi2B [a.4.5 - a.76.1] DIPHTHERIA TOXIN REPRESSOR 35 4e-04
3broC [x.x.x] TRANSCRIPTIONAL REGULATOR 35 4e-04
3echA [x.x.x] MULTIDRUG RESISTANCE OPERON REPRESSOR 34 5e-04
3broA [x.x.x] TRANSCRIPTIONAL REGULATOR 34 5e-04
1al3A [x.x.x] CYS REGULON TRANSCRIPTIONAL ACTIVATOR CYSB 34 5e-04
1dprA [a.4.5 - a.76.1] DIPHTHERIA TOX REPRESSOR 34 6e-04
1cy6A [e.10.1] DNA TOPOISOMERASE I 34 6e-04
3e6mE [x.x.x] MARR FAMILY TRANSCRIPTIONAL REGULATOR 34 6e-04
3deuA [x.x.x] TRANSCRIPTIONAL REGULATOR SLYA 34 7e-04
3bpxA [x.x.x] TRANSCRIPTIONAL REGULATOR 33 8e-04
3broB [x.x.x] TRANSCRIPTIONAL REGULATOR 33 8e-04
>1bi3A [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR
Length = 211
Score = 56.1 bits (134), Expect = 1e-10
Identities = 15/181 (8%), Positives = 37/181 (20%), Gaps = 2/181 (1%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAGD 60
M R + + AERL S P ++Q + ++TP G
Sbjct: 7 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGR 66
Query: 61 XXXXXXXXXXXXXXXXXXXVRRAGQE--ALRFGVPENXXXXXXXXXXXXRRGLGQAVEVL 118
+ + + ++
Sbjct: 67 TLATAVMRKHRLAERLLTDIIGLDINKVHDEARWEHVMSDEVERRLVKVLKDVSRSPFGN 126
Query: 119 EMHTPEQVRALKEGRLDYGLAGLKVEDPEVAKEPLLRVPIVVALPETHPLAPRARVPLRA 178
+ +++ +D + + E + + V +
Sbjct: 127 PIPGLDELGVPGTRVIDAATSMPRKVRIVQINEIFQVETDQFTQLLDADIRVGSEVEIVD 186
Query: 179 L 179
Sbjct: 187 H 187
>1c0wA [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR
Length = 173
Score = 55.8 bits (134), Expect = 2e-10
Identities = 13/151 (8%), Positives = 30/151 (19%), Gaps = 5/151 (3%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAGD 60
M R + + AERL S P ++Q + ++TP G
Sbjct: 9 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGR 68
Query: 61 XXXXXXXXXXXXXXXXXXXVRRAGQEA---LRFGVPENXXXXXXXXXXXXRRGLGQAVEV 117
+ + + +
Sbjct: 69 TLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKDV--SRSP 126
Query: 118 LEMHTPEQVRALKEGRLDYGLAGLKVEDPEV 148
P +++ + ++
Sbjct: 127 FGNPIPGLDELGVIVQINEIFQVETDQFTQL 157
>1b9nA [a.4.5 - b.40.6 - b.40.6] PROTEIN (MODE)
Length = 258
Score = 50.2 bits (119), Expect = 7e-09
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQA-XXXXXXXXXXXXXPFRLTPAG 59
DPRR+ +A S + A+ +S + I LT G
Sbjct: 19 ADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGAVLTRYG 78
>1b9mB [a.4.5 - b.40.6 - b.40.6] PROTEIN (MODE)
Length = 244
Score = 48.9 bits (115), Expect = 2e-08
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQA 38
DPRR+ +A S + A+ +S + I
Sbjct: 17 ADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINE 54
>1b9nB [a.4.5 - b.40.6 - b.40.6] PROTEIN (MODE)
Length = 245
Score = 46.0 bits (108), Expect = 1e-07
Identities = 24/234 (10%), Positives = 51/234 (21%), Gaps = 10/234 (4%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAGD 60
DPRR+ +A S + A+ +S + I R
Sbjct: 17 ADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVEAVLTRYGQRLI 76
Query: 61 XXXXXXXXXXXXXXXXXXXVRRAGQEALRFGVPENXXXXXXXXXXXXRRGLGQAVEVLEM 120
+L + Q V+VL
Sbjct: 77 QLYDLLAQIQQKAFDVLSDDDALPLNSLLAAIS-RFSLQTSARNQWFGTITAQHVDVLLA 135
Query: 121 HTPEQVRALKEGRLD----YGLAGLKVEDPEVAKEPLLRVPIVVALPETHPLAPRARVPL 176
+++ + + + + + V + + +
Sbjct: 136 DGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIER 195
Query: 177 RALKEEXXXXXXXXXXXXXYEAFMEVFRRAGFAPKVVREVARFSQAVSLVAAGL 230
A + E V + + + V + A S++ A L
Sbjct: 196 GAEQCE-----VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATL 244
>1b9mA [a.4.5 - b.40.6 - b.40.6] PROTEIN (MODE)
Length = 255
Score = 43.7 bits (102), Expect = 7e-07
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
DPRR+ +A S + A+ +S + I
Sbjct: 17 ADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAIN 53
>1bi2A [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR
Length = 214
Score = 41.9 bits (97), Expect = 2e-06
Identities = 16/182 (8%), Positives = 33/182 (18%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAGD 60
M R + + AERL S P ++Q + ++TP G
Sbjct: 8 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGR 67
Query: 61 XXXXXXXXXXXXXXXXXXXVRRAGQEALRFGVPENXXXXXXXXXXXXRRGLGQAVEVLEM 120
+ + + L
Sbjct: 68 TLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKDVSRSPFG 127
Query: 121 HTPEQVRALKEGRLDYGLAGLKVEDPEVAKEPLLRVPIVVALPETHPLAPRARVPLRALK 180
+ + L A + + + A +
Sbjct: 128 NPIPGLDELGVPGTRVIDAATSMPRKVRIVQINEIFQVETDQFTQLLDADIRVGSEVEIV 187
Query: 181 EE 182
+
Sbjct: 188 DR 189
>1bi1A [x.x.x] DIPHTHERIA TOXIN REPRESSOR
Length = 212
Score = 41.5 bits (96), Expect = 3e-06
Identities = 16/182 (8%), Positives = 32/182 (17%), Gaps = 1/182 (0%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAGD 60
M R + + AERL S P ++Q + ++TP G
Sbjct: 7 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGR 66
Query: 61 XXXXXXXXXXXXXXXXXXXVRRAGQEALRFGVPENXXXXXXXXXXXXRRGLGQAVEVLEM 120
+ + + +
Sbjct: 67 TLATAVMRKHRLAERLLTDIIGLDINKVHDEARWEHVMSDEVERRLVKVLKDVSRSPFGN 126
Query: 121 HTPEQVRALKEGRLDYGLAGLKVEDPEVAKEPLLRVPIVVALPETHPLAPRARVPLRALK 180
P G A + + + A +
Sbjct: 127 PIPGLDELGVPGTRVIDAATS-MPRKVRIVQINEIFQVETDQFTQLLDADIRVGSEVEIV 185
Query: 181 EE 182
+
Sbjct: 186 DR 187
>1c0wC [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR
Length = 175
Score = 37.9 bits (87), Expect = 4e-05
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
M R + + AERL S P ++Q +
Sbjct: 9 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVA 45
>3df8A [x.x.x] POSSIBLE HXLR FAMILY TRANSCRIPTIONAL FACTOR
Length = 105
Score = 37.2 bits (86), Expect = 6e-05
Identities = 4/37 (10%), Positives = 10/37 (27%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
+ + +S L++RI+
Sbjct: 27 YTLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIK 63
>1a40A [x.x.x] PHOSPHATE-BINDING PERIPLASMIC PROTEIN PRECURSOR
Length = 321
Score = 37.0 bits (84), Expect = 7e-05
Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 85 QEALRFGVPENXXXXXXXXXXXXRRGLGQAVEVLEMHTPEQVRALKEGRLDYGLAGLKVE 144
+ +L ++ G V + + V+ + +D+G + +
Sbjct: 1 EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLS 60
Query: 145 DPEVAKE-----PLLRVPIVVALPETHPLAPRARVPLRAL 179
D ++A+E P + +V+A+ + + + L
Sbjct: 61 DEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTL 100
>3e6mF [x.x.x] MARR FAMILY TRANSCRIPTIONAL REGULATOR
Length = 145
Score = 36.9 bits (85), Expect = 7e-05
Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 1 MDPRRLKAFLVLAEEKSF-HKAAERLYLSQPALTQRIQ 37
+ +L+ L+ L + Q ++ +
Sbjct: 39 LPTPKLRLLSSLSAYGELTVGQLATLGVEQSTTSRTVD 76
>1cy0A [e.10.1] DNA TOPOISOMERASE I
Length = 534
Score = 36.5 bits (84), Expect = 1e-04
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 1 MDPRR-LKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAG 59
+ P + E S K E+ + +P+ I + F G
Sbjct: 426 LTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMG 485
>3bj6B [x.x.x] TRANSCRIPTIONAL REGULATOR, MARR FAMILY
Length = 148
Score = 36.5 bits (84), Expect = 1e-04
Identities = 2/38 (5%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 1 MDPRRLKAFLVLAEEKSF-HKAAERLYLSQPALTQRIQ 37
+ + L+ + +++ +Q
Sbjct: 36 VTVGQRAILEGLSLTPGATAPQLGAALQKRQYISRILQ 73
>1biaA [x.x.x] BIRA BIFUNCTIONAL PROTEIN[MASQUE : MEMB(X) 45 /
COIL(x) 0]
Length = 292
Score = 36.2 bits (83), Expect = 1e-04
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 2 DPRRLK--AFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
+ LK A L E S + E L +S+ A+ + IQ
Sbjct: 4 NTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQ 41
>3cjnA [x.x.x] TRANSCRIPTIONAL REGULATOR, MARR FAMILY
Length = 139
Score = 36.1 bits (83), Expect = 1e-04
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 2 DPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
+R A L + + Q L++ +
Sbjct: 35 TAKRALAILSAKDGLPIGTLGIFAVVEQSTLSRALD 70
>3e6mB [x.x.x] MARR FAMILY TRANSCRIPTIONAL REGULATOR
Length = 146
Score = 36.1 bits (83), Expect = 1e-04
Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 1 MDPRRLKAFLVLAEEKSF-HKAAERLYLSQPALTQRIQ 37
+ +L+ L+ L + Q ++ +
Sbjct: 39 LPTPKLRLLSSLSAYGELTVGQLATLGVEQSTTSRTVD 76
>1dtr- [x.x.x] DIPHTHERIA TOXIN REPRESSOR
Length = 165
Score = 36.0 bits (82), Expect = 1e-04
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
M R + + AERL S P ++Q +
Sbjct: 7 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVA 43
>1a54A [c.94.1] PHOSPHATE-BINDING PROTEIN
Length = 321
Score = 35.5 bits (80), Expect = 2e-04
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 85 QEALRFGVPENXXXXXXXXXXXXRRGLGQAVEVLEMHTPEQVRALKEGRLDYGLAGLKVE 144
+ +L ++ G V + + V+ + +D+G + +
Sbjct: 1 EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLS 60
Query: 145 DPEVA-----KEPLLRVPIVVALPETHPLAPRARVPLRAL 179
D ++A + P + +V+A+ + + + L
Sbjct: 61 DEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTL 100
>1ddnA [a.4.5 - a.76.1] DIPHTHERIA TOX REPRESSOR
Length = 118
Score = 35.4 bits (81), Expect = 2e-04
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
M R + + AERL S P ++Q +
Sbjct: 8 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVA 44
>1bi3B [a.4.5 - a.76.1] DIPHTHERIA TOXIN REPRESSOR
Length = 136
Score = 35.4 bits (81), Expect = 2e-04
Identities = 12/59 (20%), Positives = 19/59 (32%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAG 59
M R + + AERL S P ++Q + ++TP G
Sbjct: 7 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTG 65
>2bv6A [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA
Length = 135
Score = 35.3 bits (81), Expect = 2e-04
Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 1 MDPRRLKAFLVLAEEK--SFHKAAERLYLSQPALTQRIQ 37
+ + +L +E + K L L ++ ++
Sbjct: 31 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLK 69
>1cy8A [e.10.1] DNA TOPOISOMERASE I
Length = 563
Score = 35.0 bits (80), Expect = 3e-04
Identities = 8/48 (16%), Positives = 13/48 (27%)
Query: 12 LAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAG 59
E S K E+ + +P+ I + F G
Sbjct: 444 RFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMG 491
>1c0wB [a.4.5 - a.76.1 - b.34.1] DIPHTHERIA TOXIN REPRESSOR
Length = 219
Score = 34.9 bits (79), Expect = 3e-04
Identities = 17/186 (9%), Positives = 35/186 (18%), Gaps = 4/186 (2%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAGD 60
M R + + AERL S P ++Q + ++TP G
Sbjct: 9 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGR 68
Query: 61 XXXXXXXXXXXXXXXXXXXV---RRAGQEALRFGVPENXXXXXXXXXXXXRRGLGQAVE- 116
+ + + ++
Sbjct: 69 TLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKDVSRSPFG 128
Query: 117 VLEMHTPEQVRALKEGRLDYGLAGLKVEDPEVAKEPLLRVPIVVALPETHPLAPRARVPL 176
E A +D + + E + + V +
Sbjct: 129 NPIPGLDELGVAPGTRVIDAATSMPRKVRIVQINEIFQVETDQFTQLLDADIRVGSEVEI 188
Query: 177 RALKEE 182
Sbjct: 189 VDRDGH 194
>1bi2B [a.4.5 - a.76.1] DIPHTHERIA TOXIN REPRESSOR
Length = 138
Score = 34.7 bits (79), Expect = 4e-04
Identities = 11/58 (18%), Positives = 18/58 (31%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPA 58
M R + + AERL S P ++Q + ++TP
Sbjct: 8 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPT 65
>3broC [x.x.x] TRANSCRIPTIONAL REGULATOR
Length = 129
Score = 34.5 bits (79), Expect = 4e-04
Identities = 3/37 (8%), Positives = 6/37 (16%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
+E + T +Q
Sbjct: 28 TQTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQ 64
>3echA [x.x.x] MULTIDRUG RESISTANCE OPERON REPRESSOR
Length = 129
Score = 34.1 bits (78), Expect = 5e-04
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAG 59
+ P + ++ E++ + +T++I+ LT G
Sbjct: 35 LTPPDVHVLKLIDEQRGL-NLQDLGRQMCALITRKIRE----LEGRNLVRRQLFLTDEG 88
>3broA [x.x.x] TRANSCRIPTIONAL REGULATOR
Length = 129
Score = 34.1 bits (78), Expect = 5e-04
Identities = 3/37 (8%), Positives = 6/37 (16%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
+E + T +Q
Sbjct: 29 TQTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQ 65
>1al3A [x.x.x] CYS REGULON TRANSCRIPTIONAL ACTIVATOR CYSB
Length = 237
Score = 34.1 bits (77), Expect = 5e-04
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 3/119 (2%)
Query: 115 VEVLEMHTPEQVRALKEGRLDYGLA-GLKVEDPEVAKEPLLRVPIVVALPETHPLAPRAR 173
+ + + + A+ +G D+ +A ++ P + + HPLA +
Sbjct: 37 LHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPEHPLATKGS 96
Query: 174 VPLRALKEEXXXXXXXXXXXXXYEAFMEVFRRAGFAPKVVREVARFSQAVSLVAAGLGV 232
V + L + F RAG P++V + V GLGV
Sbjct: 97 VSIEELAQY--PLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV 153
>1dprA [a.4.5 - a.76.1] DIPHTHERIA TOX REPRESSOR
Length = 134
Score = 33.9 bits (77), Expect = 6e-04
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRI 36
M R + + AERL S P ++Q +
Sbjct: 8 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTV 43
>1cy6A [e.10.1] DNA TOPOISOMERASE I
Length = 562
Score = 33.8 bits (77), Expect = 6e-04
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 1 MDPRRLKAFLV-LAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAG 59
+ P + E S K E+ + +P+ I + F G
Sbjct: 431 LTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMG 490
>3e6mE [x.x.x] MARR FAMILY TRANSCRIPTIONAL REGULATOR
Length = 146
Score = 33.8 bits (77), Expect = 6e-04
Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 1 MDPRRLKAFLVLAEEKSF-HKAAERLYLSQPALTQRIQ 37
+ +L+ L+ L + Q ++ +
Sbjct: 41 LPTPKLRLLSSLSAYGELTVGQLATLGVEQSTTSRTVD 78
>3deuA [x.x.x] TRANSCRIPTIONAL REGULATOR SLYA
Length = 132
Score = 33.8 bits (77), Expect = 7e-04
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 1 MDPRRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQAXXXXXXXXXXXXXPFRLTPAG 59
L L ++S + A+ + + QP+L + + +LT
Sbjct: 32 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQ--LEDKGLISRQKRIKLTEKA 88
>3bpxA [x.x.x] TRANSCRIPTIONAL REGULATOR
Length = 147
Score = 33.5 bits (76), Expect = 8e-04
Identities = 3/40 (7%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 1 MDPRRLKAFLVLAEEK--SFHKAAERLYLSQPALTQRIQA 38
+ ++ L + E + A ++ + + + ++
Sbjct: 33 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRR 72
>3broB [x.x.x] TRANSCRIPTIONAL REGULATOR
Length = 133
Score = 33.4 bits (76), Expect = 8e-04
Identities = 3/34 (8%), Positives = 6/34 (17%)
Query: 4 RRLKAFLVLAEEKSFHKAAERLYLSQPALTQRIQ 37
+E + T +Q
Sbjct: 35 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQ 68
Database: 95pdb09Oct16_0000
Posted date: Oct 27, 2009 4:27 PM
Number of letters in database: 15,983,541
Number of sequences in database: 66,450
Lambda K H
0.325 0.141 0.442
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 66450
Number of Hits to DB: 25,129,011
Number of extensions: 1579866
Number of successful extensions: 19300
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 9838
Number of HSP's successfully gapped: 474
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)