RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= AAS80854.1 tthe0 AAS80854.1 GIB00176CH01 "ribosome recycling
factor (rrf)"
         (185 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF01765 RRF "Ribosome recycling factor"                               145   5e-38

>PF01765 RRF "Ribosome recycling factor"
          Length = 165

 Score =  145 bits (366), Expect = 5e-38
 Identities = 86/164 (52%), Positives = 118/164 (71%)

Query: 21  LEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIE 80
           L+  LA +RTGRANP+LL  ++VEYYG+  PLNQ+A V+ PD RTL +  +D++ +KAIE
Sbjct: 2   LKRELAKIRTGRANPSLLDGIRVEYYGSPTPLNQLAQVSVPDARTLSITPFDKSLVKAIE 61

Query: 81  KAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRRXXXXXX 140
           KAIR SDLGLNP N G  + + IPPLTEERRK+LV+  ++ AEE +VA+RNIRR      
Sbjct: 62  KAIRASDLGLNPQNDGTVIRVPIPPLTEERRKELVKVAKKEAEEAKVAVRNIRRDANDKL 121

Query: 141 XXXXXXXHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEIL 184
                   +SED+ KR E E+QK+TD++I K D+L + KE+E++
Sbjct: 122 KKLEKDKEISEDDVKRLEKEVQKLTDKYIKKIDELLKAKEKELM 165


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.319    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 12,177,819
Number of extensions: 693787
Number of successful extensions: 86390
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 2053
Number of HSP's successfully gapped: 230
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)