RPS-BLAST 2.2.16 [Mar-25-2007]
Database: 40scop73nmM
9549 sequences; 1,678,726 total letters
Searching..................................................done
Query= AAS80359.1 tthe0 AAS80359.1 GIB00176CH01 "sugar ABC
transporter, periplasmic sugar-binding.."
(417 letters)
Score E
Sequences producing significant alignments: (bits) Value
1urdA [c.94.1.1] MALTOSE-BINDING PROTEIN 153 3e-40
1j1nA [c.94.1.1] ALGQ2 151 1e-39
1a7lA [c.94.1.1] MALE-B363 150 3e-39
1eu8A [c.94.1.1] TREHALOSE/MALTOSE BINDING PROTEIN 142 9e-37
1eljA [c.94.1.1] MALTODEXTRIN-BINDING PROTEIN 141 1e-36
1a99A [c.94.1.1] PUTRESCINE-BINDING PROTEIN 115 7e-29
1potA [c.94.1.1] SPERMIDINE/PUTRESCINE-BINDING PROTEIN 101 1e-24
1y4tA [c.94.1.1] PUTATIVE IRON-UPTAKE ABC TRANSPORT SYSTEM 74 3e-16
1xvxA [c.94.1.1] YFUA 63 8e-13
1pc3A [c.94.1.1] PHOSPHATE-BINDING PROTEIN 1 60 5e-12
1z21A1 [a.243.1.2] YOP PROTEINS TRANSLOCATION PROTEIN H A:42 -- 145 57 4e-11
1q35A [c.94.1.1] IRON BINDING PROTEIN FBPA 43 5e-07
2ajfE1 [d.318.1.1] SARS-CORONAVIRUS SPIKE PROTEIN E:323 -- 502 43 8e-07
1d9vA [c.94.1.1] PROTEIN (IRON-UTILIZATION PERIPLASMIC PROTEIN) 41 2e-06
1twyA [c.94.1.1] ABC TRANSPORTER, PERIPLASMIC SUBSTRATE-BINDING 36 7e-05
1onwA2 [c.1.9.13] ISOASPARTYL DIPEPTIDASE A:63 -- 346 35 2e-04
2thiA [c.94.1.1] THIAMINASE I 35 2e-04
1eyzA3 [d.142.1.2] PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2... 33 7e-04
1eucB2 [d.142.1.4] SUCCINYL-COA SYNTHETASE, BETA CHAIN B:0 -- 245 33 8e-04
>1urdA [c.94.1.1] MALTOSE-BINDING PROTEIN
Length = 370
Score = 153 bits (387), Expect = 3e-40
Identities = 68/380 (17%), Positives = 131/380 (34%), Gaps = 19/380 (5%)
Query: 37 EFWHGFTGGAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVPAMAQ 96
W + G ++ + ++ KA G V V Q A GK P +
Sbjct: 4 TVWS-WQTGPELQDVKQIAAQWAKAH-GDKVIVVDQSSNPKGFQFYATAARTGKGPDVVF 61
Query: 97 AFENNIALYLEAKALL-PIESLGVRLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKD 155
++ + L+ P+ S + ++A++ G +Y VP + + +YYNK
Sbjct: 62 GMPHDNNGVFAEEGLMAPVPSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKK 121
Query: 156 LLKKHGVPVPATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFF-FNLGGSYLKDGKLV 214
L+ + P T EFV A +F + F L +
Sbjct: 122 LVPQP----PQTWAEFVKDANAHGFMYDQANLYFDYAIIGGYGGYVFKDNNGTLDPNNIG 177
Query: 215 LNSKEAVEALTLLQNGVKEGW--AKPITSGYINQNLGSGPYAFSVDTSAGYTYYLRAAKF 272
L++ AV+A TL+++ V + +G V + T + AK
Sbjct: 178 LDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYV-SGPWDTADIEKAKI 236
Query: 273 DLGVATLPGRTKGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLSPRAQAVFATATG 332
D GV P G+ + V +++ + QA ++ + S +AQ ++ +
Sbjct: 237 DFGVTPWPTLPNGKHATPFLGVITAFVNKES--KTQAADWSLVQALTSAQAQQMYFRDSQ 294
Query: 333 YVPVTEGALKDPVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQIRFDILGQAIKEAIL 392
+P + +P + V Q RYA P + + + + ++ I
Sbjct: 295 QIPALLSVQRSS----AVQSSPTFKAFVEQLRYAVPMPNIPQMQAV--WQAMSILQNIIA 348
Query: 393 NKADPKAALDRAQKLAEDLL 412
K P+ + + +
Sbjct: 349 GKVSPEQGAKDFVQNIQKGI 368
>1j1nA [c.94.1.1] ALGQ2
Length = 492
Score = 151 bits (382), Expect = 1e-39
Identities = 36/427 (8%), Positives = 84/427 (19%), Gaps = 44/427 (10%)
Query: 30 ARAKVVAEFWHGFTGGAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAG 89
+ + F V + + ++ V + + A+G
Sbjct: 7 TDKPLTLKIHMHFRDKWVWDENW-PVAKESFRLTNVKLQSVANKAATNSQEQFNLMMASG 65
Query: 90 KVPAMAQAFENNIALYLEAKA----------LLPIESLGVRLQGVNLTFLNAVRFGGVVY 139
+P + + + + G +Y
Sbjct: 66 DLPDVVGGDNLKDKFIQYGQEGAFVPLNKLIDQYAPHIKAFFKSHPEVERAIKAPDGNIY 125
Query: 140 GVPFN---KSIQVLYYNKDLLKKHGVPVPATLEEFVAAAKKLSRAEGGPV---------- 186
+P+ + + +D LKK + P ++E K +
Sbjct: 126 FIPYVPDGVVARGYFIREDWLKKLNLKPPQNIDELYTVLKAFKEKDPNGNGKADEVPFID 185
Query: 187 --------YWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKP 238
A + + K + + + KEG
Sbjct: 186 RHPDEVFRLVNFWGARSSGSDNYMDFYIDNGRVKHPWAETAFRDGMKHVAQWYKEGLIDK 245
Query: 239 ITSGY----INQNLGSGPYAFSVDTSAGYTYYLRAAK---FDLGVATLPGRTKGQPGYGL 291
Q G F+ D A + + + T +
Sbjct: 246 EIFTRKAKAREQMFGGNLGGFTHDWFASTMTFNEGLAKTVPGFKLIPIAPPTNSKGQRWE 305
Query: 292 VQGTNLVVFRQASK----EEQAVAKDFLEFVLSPRAQAVFATATGYVPVTEGALKDPVYQ 347
V + + F +F S + + V K
Sbjct: 306 EDSRQKVRPDGWAITVKNKNPVETIKFFDFYFSRPGRDISNFGVPGVTYDIKNGKAVFKD 365
Query: 348 AYAAENPDYATIVRQSRYAKFEPALAEWEQIRFDILGQAIKEAILNKADPKAALDRAQKL 407
+ + +++ R + I K + + +
Sbjct: 366 SVLKSPQPVNNQLYDMGAQIPIGFWQDYDYER-QWTTPEAQAGIDMYVKGKYVMPGFEGV 424
Query: 408 AEDLLSS 414
Sbjct: 425 NMTREER 431
>1a7lA [c.94.1.1] MALE-B363
Length = 380
Score = 150 bits (379), Expect = 3e-39
Identities = 68/388 (17%), Positives = 115/388 (29%), Gaps = 27/388 (6%)
Query: 33 KVVAEFWHGFTGGAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVP 92
+ W G L + +F K G V L K A G P
Sbjct: 1 EGKLVIWI--NGDKGYNGLAEVGKKFEK-DTGIKVTVEH---PDKLEEKFPQVAATGDGP 54
Query: 93 AMAQAFENNIALYLEAKALLPIESLGVRLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYY 152
+ + Y ++ L I + +AVR+ G + P L Y
Sbjct: 55 DIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 114
Query: 153 NKDLLKKHGVPVPATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGG------- 205
NKDLL P T EE A K+L + + + GG
Sbjct: 115 NKDLLPNP----PKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYEN 170
Query: 206 SYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPITSG-YINQNLGSGPYAFSVDTSAGYT 264
+ +++ A LT L + +K T G A +++
Sbjct: 171 GKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGP-WAW 229
Query: 265 YYLRAAKFDLGVATLPGRTKGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLSPRAQ 324
+ +K + GV LP KGQP V + + + + +AK+FLE L
Sbjct: 230 SNIDTSKVNYGVTVLPT-FKGQPSKPFVGVLSAGINAAS--PNKELAKEFLENYLLTDEG 286
Query: 325 AVFATATGYVPVTEGALKDPVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQIRFDILG 384
+ + A++P A + ++ + P + + +
Sbjct: 287 LEAVNKDKPLGAVALKSYEE----ELAKDPRIAATMENAQKGEIMPNIPQMSAFW-YAVR 341
Query: 385 QAIKEAILNKADPKAALDRAQKLAEDLL 412
A+ A + AL +
Sbjct: 342 TAVINAASGRQTVDEALKDGSQDPRVRG 369
>1eu8A [c.94.1.1] TREHALOSE/MALTOSE BINDING PROTEIN
Length = 407
Score = 142 bits (357), Expect = 9e-37
Identities = 81/410 (19%), Positives = 147/410 (35%), Gaps = 37/410 (9%)
Query: 33 KVVAEFWHGFTGGAPKAALENLVVEFNKAQQGRCVR--PVPQGGYRDLSTKIKAAFAAGK 90
+ F + ++ EF K G V + + A
Sbjct: 3 EGKIVFAV-GGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSS 61
Query: 91 VPAMAQAFENNIALYLEAKALLPIESLGVR-----LQGVNLTFLNAVRFGGVVYGVPFNK 145
P + + ++ + L P++ + A + GG +Y +P
Sbjct: 62 DPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYI 121
Query: 146 SIQVLYYNKDLLKKHGVP-VPATLEEFVAAAKKLSRAEGGPVY----------WFQPDAS 194
+LYY KDLL+K+G P T +E V A+K+ E ++
Sbjct: 122 DAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYEGLVC 181
Query: 195 TFAYFFFNLGGSY----LKDGKLVLNSKEAVEALTLLQNGVKEGWAKPI------TSGYI 244
F + ++ GGS LN E VEAL + + + + P T +
Sbjct: 182 DFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPV 241
Query: 245 NQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRTK--GQPGYGLVQGTNLVVFRQ 302
G AF + + + G + G + G ++ + +
Sbjct: 242 RLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKY 301
Query: 303 ASKEEQAVAKDFLEFVLSPRAQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIVRQ 362
+ + +A+A +F++FV S Q FA G+ P DP A +++P +
Sbjct: 302 S--DNKALAWEFVKFVESYSVQKGFAMNLGWNPGRVDVYDDP---AVVSKSPHLKELRAV 356
Query: 363 SRYAKFEPALAEWEQIRFDILGQAIKEAILNKADPKAALDRAQKLAEDLL 412
A P + + Q+ +I+ + + A+ K P+ ALD+AQK AE+L+
Sbjct: 357 FENAVPRPIVPYYPQL-SEIIQKYVNSALAGKISPQEALDKAQKEAEELV 405
>1eljA [c.94.1.1] MALTODEXTRIN-BINDING PROTEIN
Length = 380
Score = 141 bits (356), Expect = 1e-36
Identities = 59/393 (15%), Positives = 114/393 (29%), Gaps = 25/393 (6%)
Query: 30 ARAKVVAEFWHGFTGGAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAG 89
+ WH ++L E+ + + +KAA G
Sbjct: 2 KIEEGKVVIWH-AMQPNELEVFQSLAEEYMALXPEVEIVFEQKPNL---EDALKAAIPTG 57
Query: 90 KVPAMAQAFENNIALYLEAKALLPIESL--GVRLQGVNLTFLNAVRFGGVVYGVPFNKSI 147
+ P + + I + EA L PI+ L +A+++ G Y +PF
Sbjct: 58 QGPDLFIWAHDWIGKFAEAGLLEPIDEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAET 117
Query: 148 QVLYYNKDLLKKHGVPVPATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSY 207
+ YNK+++ + P T +E A +K P + F G Y
Sbjct: 118 VAIIYNKEMVSEP----PKTFDEMKAIMEKYYDPANEKYGIAWPINAYFISAIAQAFGGY 173
Query: 208 L---KDGKLVLNSKEAVEALTLLQNGVKEGWAKPITSGYINQNLGSGPYAFSVDTSAGYT 264
K + L+ E +E + A G V+
Sbjct: 174 YFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVN-GPWSI 232
Query: 265 YYLRAAKFDLGVATLP---GRTKGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLSP 321
++ A + GV LP K + + + A F +++ +
Sbjct: 233 NDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGI--KNKDAAWKFAKWLTTS 290
Query: 322 RAQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQIRFD 381
+ D +P + ++A P + +
Sbjct: 291 EESIKTLALELGYIPVLTKVLDD---PEIKNDPVIYGFGQAVQHAYLMPKSPKMSAVW-G 346
Query: 382 ILGQAIKEAILNK--ADPKAALDRAQKLAEDLL 412
+ AI E + + AD + L + Q+ + +
Sbjct: 347 GVDGAINEILQDPQNADIEGILKKYQQEILNNM 379
>1a99A [c.94.1.1] PUTRESCINE-BINDING PROTEIN
Length = 341
Score = 115 bits (289), Expect = 7e-29
Identities = 42/349 (12%), Positives = 75/349 (21%), Gaps = 22/349 (6%)
Query: 45 GAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVPAMAQAFENNIAL 104
+ V F K + G V A + + +
Sbjct: 8 NWSDYIAPDTVANFEK-ETGIKVVYDVFDSN---EVLEGKLMAGSTGFDLVVPSASFLER 63
Query: 105 YLEAKALLPIESL---GVRLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHG 161
L A P++ + L L A + +P+ + + YN D +K
Sbjct: 64 QLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVL 123
Query: 162 VPV--PATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKE 219
+ + + G + N G
Sbjct: 124 GENAPVDSWDLILKPENLEKLKSCGVSFL--DAPEEVFATVLNYLGKDPNST---KADDY 178
Query: 220 AVEALTLLQNGVKEGWAKPITSGYINQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATL 279
A LL S +L +G ++ + AK +
Sbjct: 179 TGPATDLLLKLRPNIRYF--HSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNV 236
Query: 280 PGRTKGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLSPRAQAVFATATGYVPVTEG 339
+ + A + + A FL ++L P A + Y +
Sbjct: 237 SFSIPKEGAM--AFFDVFAMPADA--KNKDEAYQFLNYLLRPDVVAHISDHVFYANANKA 292
Query: 340 ALKDPVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQIRFDILGQAIK 388
A A ENP +K
Sbjct: 293 ATPLV--SAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVK 339
>1potA [c.94.1.1] SPERMIDINE/PUTRESCINE-BINDING PROTEIN
Length = 322
Score = 101 bits (252), Expect = 1e-24
Identities = 46/347 (13%), Positives = 87/347 (25%), Gaps = 33/347 (9%)
Query: 45 GAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVPAMAQAFENNIAL 104
+ L+ +F K G V + K+K + +
Sbjct: 8 NWTEYVPPGLLEQFTKET-GIKVIYSTYESNETMYAKLKTY--KDGAYDLVVPSTYYVDK 64
Query: 105 YLEAKALLPIESLGVR-LQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGVP 163
+ + I+ + ++ LN Y +P+ + N D +
Sbjct: 65 MRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKS-- 122
Query: 164 VPATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEA 223
+ + K G + F LG S + KE A
Sbjct: 123 -VTSWADLWKPEYK------GSLLLTDDAREVFQMALRKLGYSGNT-----TDPKEIEAA 170
Query: 224 LTLLQNGVKEGWAKPITSGYINQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRT 283
L+ + A S G + G + R A + V
Sbjct: 171 YNELKKLMPNVAA--FNSDNPANPYMEGEVNLGM-IWNGSAFVARQAGTPIDVVWPKEGG 227
Query: 284 KGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLSPRAQAVFATATGYVPVTEGALKD 343
+ +L + A +E A + F+L P A GY A K
Sbjct: 228 -------IFWMDSLAIPANAKNKEGA--LKLINFLLRPDVAKQVAETIGYPTPNLAARKL 278
Query: 344 PVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQIRFDILGQAIKEA 390
A + + +++ + ++ Q +K
Sbjct: 279 L--SPEVANDKTLYPDAETIKNGEWQNDVGAASS-IYEEYYQKLKAG 322
>1y4tA [c.94.1.1] PUTATIVE IRON-UPTAKE ABC TRANSPORT SYSTEM
Length = 317
Score = 74.3 bits (181), Expect = 3e-16
Identities = 42/335 (12%), Positives = 95/335 (28%), Gaps = 29/335 (8%)
Query: 45 GAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVPAMAQAFENNIAL 104
A ++ +F + + G V +L ++ + A +N+
Sbjct: 8 ARHYNADFEIIKKFEE-KTGIKVNHTQ-AKASELIKRLSLEGSNSPADIFITADISNLTE 65
Query: 105 YLEAKALLPIESLGVRLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGVPV 164
L P+ S + F+ A K +++ YNK+ +
Sbjct: 66 AKNLGLLSPVSSKYLE------EFIPAHLRDKDKEWFAITKRARIIAYNKNTNI--DISK 117
Query: 165 PATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEAL 224
E+ A K G + A ++ + +KEA
Sbjct: 118 MKNYEDLAKAEFK------GEIVMRSATAPYSKTLLASIIAND--------GNKEAKAWA 163
Query: 225 TLLQNGVKEGWAKPITSGYINQNLGSGPYAFSVDTSAGYTYYLRAAK-FDLGVATLPGRT 283
+ + G +A G + K ++G +
Sbjct: 164 KGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFP 223
Query: 284 KGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLSPRAQAVFATATGYVPVTEGALKD 343
+ + + + + + ++ A K F+EF+LSP Q + + P+
Sbjct: 224 NQDNRGTHINISGIAMTKSSKNQDAA--KKFMEFMLSPEIQKILTDSNYEFPIRNDVELS 281
Query: 344 PVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQI 378
+ + D I + A+ ++++
Sbjct: 282 QTVKDFGTFKED--QIPVSKIAENIKEAVKIYDEV 314
>1xvxA [c.94.1.1] YFUA
Length = 311
Score = 62.7 bits (151), Expect = 8e-13
Identities = 36/317 (11%), Positives = 79/317 (24%), Gaps = 36/317 (11%)
Query: 45 GAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVPAMAQAFENNIAL 104
+ +++ V F K + + GG +L ++ +A + L
Sbjct: 11 AQHENLVKSWVDGFTKDTGIKVT--LRNGGDSELGNQLVQEGSASPADVFLTENSPAMVL 68
Query: 105 YLEAKALLPIESLGVRLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGVPV 164
AK P+++ V + V YN + + + +P
Sbjct: 69 VDNAKLFAPLDA-------VTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAELP- 120
Query: 165 PATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEAL 224
++ + K + P + F + K +E L
Sbjct: 121 -KSIMDLAKPEWKGR-------WAASPSGADFQAIVSAMLELK--------GEKATLEWL 164
Query: 225 TLLQNGVKEGWAKPITSGYINQNLGSGPYAFSVDTSAGYTYYL-RAAKFDLGVATLPGRT 283
++ +N G + +
Sbjct: 165 KAMKTNFTAYKGNSTVMKAVNA--GQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQD 222
Query: 284 KGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLSPRAQAVFATATGY-VPVTEGALK 342
G V + V AS + A++F++++ Q + T + V A
Sbjct: 223 PGAF----VSISGGGVL--ASSKHPKEAQEFVKWITGKSGQDILRTNNAFEYAVGVDAAS 276
Query: 343 DPVYQAYAAENPDYATI 359
+P +
Sbjct: 277 NPKLVPLKDLDAPKVEP 293
>1pc3A [c.94.1.1] PHOSPHATE-BINDING PROTEIN 1
Length = 333
Score = 60.0 bits (144), Expect = 5e-12
Identities = 23/214 (10%), Positives = 50/214 (23%), Gaps = 10/214 (4%)
Query: 139 YGVPFNKSIQVLYYNKDLLKKHGVPVP-ATLEEFVAAAKKLSRAEGGPVYWFQPDASTFA 197
+ +I+ + GV +P + + Q
Sbjct: 109 LAAMYQGTIKTWDDPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPEGWGK 168
Query: 198 YFFFN--LGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPITSGYINQNLGSGPYAF 255
F + + + V V + +
Sbjct: 169 SPGFGTTVDFPAVPGALGENGNGGMVTGCAETPGCVAYIGISFLDQASQRGLGEAQLGNS 228
Query: 256 SVDTSAGYTYYLRAA------KFDLGVATLPGRTKGQPGYGLVQGTNLVVFRQASKEEQA 309
S + ++AA K A GY ++ +V + A
Sbjct: 229 SGNFLLPDAQSIQAAAAGFASKTPANQAISMIDGPAPDGYPIINYEYAIVNNRQKDAATA 288
Query: 310 -VAKDFLEFVLSPRAQAVFATATGYVPVTEGALK 342
+ FL + ++ +A F + P+ +K
Sbjct: 289 QTLQAFLHWAITDGNKASFLDQVHFQPLPPAVVK 322
>1z21A1 [a.243.1.2] YOP PROTEINS TRANSLOCATION PROTEIN H A:42 -- 145
Length = 96
Score = 56.9 bits (137), Expect = 4e-11
Identities = 11/85 (12%), Positives = 23/85 (27%)
Query: 294 GTNLVVFRQASKEEQAVAKDFLEFVLSPRAQAVFATATGYVPVTEGALKDPVYQAYAAEN 353
V Q LE + +P +A+ A + A+ P ++ +
Sbjct: 3 EKTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQF 62
Query: 354 PDYATIVRQSRYAKFEPALAEWEQI 378
+ E L ++
Sbjct: 63 DSFGKRWEAILLQVLEGILPYLSEL 87
>1q35A [c.94.1.1] IRON BINDING PROTEIN FBPA
Length = 317
Score = 43.3 bits (102), Expect = 5e-07
Identities = 46/240 (19%), Positives = 79/240 (32%), Gaps = 36/240 (15%)
Query: 149 VLYYNKDLLKKHGVPVPATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYL 208
V+Y +KD + K +P + K G V S F + Y
Sbjct: 103 VIYTSKDRVGK--LPAGFDYLDLAKPEYK------GKVCVRSGKNSYNVSLFAAMIEHYG 154
Query: 209 KDGKLVLNSKEAVEALTLLQNGVKEGWAKPITSGYINQNLGSGPYAFSVDTSAGYTYYLR 268
+ + L+ G+K A+ G +Q D S G +YY
Sbjct: 155 IE-----------KTKAFLE-GLKANLARKPQGGDRDQVKAIK--EGICDYSIGNSYYYG 200
Query: 269 AAKFD-----LGVATLPGRTKGQPGYGL-VQGTNLVVFRQASKEEQAVAKDFLEFVLSPR 322
D A + G+ G + G + +A A +E++ +
Sbjct: 201 KMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIA----KHSPNKANAVKLIEYLSGEK 256
Query: 323 AQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIVRQSRYAK-FEPALAEWEQIRFD 381
AQ ++A PV EG + + + D + AK +E AL ++++FD
Sbjct: 257 AQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKL---EDIAKNYEAALKLVDEVKFD 313
>2ajfE1 [d.318.1.1] SARS-CORONAVIRUS SPIKE PROTEIN E:323 -- 502
Length = 174
Score = 42.7 bits (100), Expect = 8e-07
Identities = 12/117 (10%), Positives = 23/117 (19%), Gaps = 12/117 (10%)
Query: 52 ENLVVEFNKAQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVPAMAQAFENN-IALYLEAKA 110
+ V + Q G + + + + N YL
Sbjct: 63 GDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWN---TRNIDATSTGNYNYKYRYLRHGK 119
Query: 111 LLPIESLGVRLQGV-----NLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGV 162
L P E + + YG + + Y +
Sbjct: 120 LRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFY---TTTGIGYQPYRVVVLSF 173
>1d9vA [c.94.1.1] PROTEIN (IRON-UTILIZATION PERIPLASMIC PROTEIN)
Length = 309
Score = 41.5 bits (97), Expect = 2e-06
Identities = 35/227 (15%), Positives = 68/227 (29%), Gaps = 26/227 (11%)
Query: 130 NAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGVPVPATLEEFVAAAKKLSRAEGGPVYWF 189
V + + +V+ Y+ L + + ++ ++ K G +
Sbjct: 85 KGVPLAPKKDWIALSGRSRVVVYDHTKLSEK--DMEKSVLDYATPKWK------GKI--- 133
Query: 190 QPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPITSGYINQ-NL 248
ST F + G K A+ L L+ K S +
Sbjct: 134 -GYVSTSGAFLEQVVALSKMKGD-----KVALNWLKGLKENGK---LYAKNSVALQAVEN 184
Query: 249 GSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRTKGQPGYGLVQGTNLVVFRQASKEEQ 308
G P A + Y Y L K + + + Q LV + V + + + +
Sbjct: 185 GEVPAALINN---YYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAE 241
Query: 309 AVAKDFLEFVLSPRAQAVFATATGYVPVTEGALKDPVYQAYAAENPD 355
A + F++F+ S + Q A P+ + + Y
Sbjct: 242 A--QKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAP 286
>1twyA [c.94.1.1] ABC TRANSPORTER, PERIPLASMIC SUBSTRATE-BINDING
Length = 249
Score = 36.3 bits (82), Expect = 7e-05
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 18/152 (11%)
Query: 183 GGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPITSG 242
+ +AS+ + F K V + + + A T L +
Sbjct: 114 DQKIAVVTREASSGTRYSFES---LXGLTKTVKDREVSDVAPTALVVNSNSXXKTLVNHN 170
Query: 243 YINQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRTKGQPGYGLVQGTNLVVFRQ 302
A + ++A +F+ T + Y L + ++ +
Sbjct: 171 ---------TQAVGFISIGSVDKSVKAIQFEKADPTSD--NIAKHTYQLSRPFLILHYS- 218
Query: 303 ASKEEQAVAKDFLEFVLSPRAQAVFATATGYV 334
K+F+ F+ S A+ + GY+
Sbjct: 219 --DNADEQTKEFIAFLKSESAKKLIVEY-GYI 247
>1onwA2 [c.1.9.13] ISOASPARTYL DIPEPTIDASE A:63 -- 346
Length = 271
Score = 34.8 bits (80), Expect = 2e-04
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 65 RCVRPVPQGGYRDLSTKIKAAFAAGKVPAMAQAFENNIALYLEAKALLPIESLGVRLQGV 124
+ + +GG D+++ I A + +A+A + I L A+ L + G + G
Sbjct: 178 QALEFARKGGTIDITSSIDEPVAPAE--GIARAVQAGIPL---ARVTLSSDGNGSGVAGF 232
Query: 125 NLTFLNAVRFGGVVYGVPFNKSIQVLYYN 153
T L V+ Y + +++ L +
Sbjct: 233 E-TLLETVQVLVKDYDFSISDALRPLTSS 260
>2thiA [c.94.1.1] THIAMINASE I
Length = 362
Score = 34.6 bits (79), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 129 LNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGVPVPATLEE 170
L + G VYG+P +L+Y K LK V L +
Sbjct: 88 LQGAKRNGEVYGLPQILCTNLLFYRKGDLKIGQVDNIYELYK 129
>1eyzA3 [d.142.1.2] PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2
A:113 -- 318
Length = 204
Score = 32.9 bits (74), Expect = 7e-04
Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 9/40 (22%)
Query: 154 KDLLKKHGVPVPAT-----LEEFVAAAKKLSRAEGGPVYW 188
+ ++ +P F A + G P
Sbjct: 7 RLAAEELQLPTSTYRFADSESLFREAVADI----GYPCIV 42
>1eucB2 [d.142.1.4] SUCCINYL-COA SYNTHETASE, BETA CHAIN B:0 -- 245
Length = 246
Score = 32.8 bits (75), Expect = 8e-04
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 151 YYNKDLLKKHGVPVPA-----TLEEFVAAAKKLS 179
Y +K L+ +GV V T E + AAK+L+
Sbjct: 7 YQSKKLMSDNGVKVQRFFVADTANEALEAAKRLN 40
Database: 40scop73nmM
Posted date: Nov 2, 2009 11:39 AM
Number of letters in database: 1,678,726
Number of sequences in database: 9549
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 13,204,021
Number of extensions: 913723
Number of successful extensions: 3877
Number of sequences better than 1.0e-03: 9
Number of HSP's gapped: 3795
Number of HSP's successfully gapped: 90
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)