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Result of HMM:PFM for atum0:AAK86987.1


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## Summary of Sequence Search
   1::863
 447::862  PF00940 0.0% 43.2291666666667  DNA-dependent RNA polymerase 
   1::863


## Multiple Alignment
                         -         -         -         -         +         -         -:70
query           MIELDTTNELFLAAHGCLPTEHEAWEKQIALEEEMRSAGIARFEKGLEKNREKNAEASNLSSRRMIIHAH
PF00940         ----------------------------------------------------------------------


                         -         -         *         -         -         -         -:140
query           AQVIAGLEAFLAEASSGKAGKKHTAVAYLKDADLDVVAHLTLRNLFDYVSMRMKLTPLSIRLAAMVEDEL
PF00940         ----------------------------------------------------------------------


                         +         -         -         -         -         *         -:210
query           FFNAFKGHDKDAYEYARKKISEQTHNAVHQKRAMTKHAKHKGAEWQDWSQDVKAKVGLKLIEIAVEQTGL
PF00940         ----------------------------------------------------------------------


                         -         -         -         +         -         -         -:280
query           FEIVRQSEGAHNTNIYVVATKETLDWLATENSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSGRVRNLRLI
PF00940         ----------------------------------------------------------------------


                         -         *         -         -         -         -         +:350
query           KTGNRQYLMDLESVDMPKVYHSINAMQNTAWSINHRVYEVMASLWDNQSTLACIPQADDMPLPEKPMWLA
PF00940         ----------------------------------------------------------------------


                         -         -         -         -         *         -         -:420
query           PEMKREDMSPEQLEEFSRWKSERTTIYEANARAVSKRLAFSRMLGVATRFKDEEEFYFPHQMDFRGRVYA
PF00940         ----------------------------------------------------------------------


                         -         -         +         -         -         -         -:490
query           VPLFLNPQGDDASHGLLQFANSVPITNEEGADWLAIHGAGLWGVDKCSMNERVEWVMANQREILASAENP
PF00940         --------------------------gekglewLkihlanlyGvdKasfdervkfveenleeildsaknP


                         *         -         -         -         -         +         -:560
query           YDNRFWLTAEKPWQALAFCFEWQGYVAEGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLVPSDK
PF00940         ldgerwwlkadepwqfLaaclelknalesgnpakyesklPvhqDgsCnGlQhyaaLgrDeegakqvNLip


                         -         -         -         *         -         -         -:630
query           PNDIYATVASVLIAKLRDIAAACPEDTTTKEVKDKETKENKTIVVESDGSMARKWLAYGITRKVTKRPVM
PF00940         sdkpqDvYsevaeevkekleedi........................kaekenelakllkgkitRkvvKq


                         -         +         -         -         -         -         *:700
query           TLAYGASEFGFREQVFTDTVTPWKQAAGEAFPFEGTGFAAASFLGLLIWDCVGEVVVAAAGAMDWLQKVA
PF00940         tvMtsvYGvtfigarkqikkqlkdkkekee....aeeaasrkaaiylaklileslsevfsaakeimkwLt


                         -         -         -         -         +         -         -:770
query           KIAAKESLPVIWNTPAGLKVMQEYTTSEQKRLELTFQKVRLQLSIDVASKKIDKRKQGSGISPNWVHSMD
PF00940         evakiisksekpviWttplglpvvqpyrkskkkkvktslqkvslkkkntlspv..dkrkqraafpPNfiH


                         -         -         *         -         -         -         -:840
query           AAHMQLTVSRCHDEGIRSFSLIHDSYGTHAGNAWAMAQFLREEFVKMYGDHDVLAEFGREITAMLPEGTQ
PF00940         SlDAthlmltaeecakagl.sfasVHDsfwthasdvdkmnallreaFielyse.dvlerlaeefearykk


                         +         -         -         -         -         *         -:910
query           LPPLPEKGSLDLSQVLESAFFFA-----------------------------------------------
PF00940         sleeakvkkkaekkikplefpe------------------------------------------------