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Caenorhabditis elegans (nematode) (cele0)
Gene : C26G2.1
DDBJ      :             Ribosomal protein L3
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  65/199 : Viruses  0/175   --->[See Alignment]
b.1.1b.1.2b.1.3d.58.4
:1270 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->365 3b43A PDBj 2e-13 22.9 %
:BLT:PDB   447->961 3b43A PDBj 2e-15 25.4 %
:BLT:PDB   988->1061 2dtgE PDBj 4e-06 38.9 %
:RPS:PDB   21->378 1bihA PDBj 1e-24 13.9 %
:RPS:PDB   581->966 1bihA PDBj 7e-23 14.0 %
:RPS:PDB   974->1064 2ck2A PDBj 1e-11 14.4 %
:RPS:SCOP  19->105 1g0yR3  b.1.1.4 * 3e-11 8.0 %
:RPS:SCOP  142->370 2cb2A1  d.58.4.17 * 3e-10 5.6 %
:RPS:SCOP  575->701 1bd2E2  b.1.1.2 * 2e-06 9.1 %
:RPS:SCOP  684->779 1fhgA  b.1.1.4 * 2e-11 20.0 %
:RPS:SCOP  764->872 1wgoA  b.1.3.1 * 4e-12 12.3 %
:RPS:SCOP  866->971 1hxmB2  b.1.1.2 * 2e-05 14.7 %
:RPS:SCOP  965->1066 1x5fA1  b.1.2.1 * 1e-12 13.9 %
:HMM:SCOP  18->131 1moeA1 b.1.1.1 * 2.7e-12 29.2 %
:HMM:SCOP  125->232 1vcaA1 b.1.1.3 * 1.2e-19 29.4 %
:HMM:SCOP  234->329 1vcaA1 b.1.1.3 * 1.3e-14 29.2 %
:HMM:SCOP  330->418 1vcaA1 b.1.1.3 * 2.6e-10 21.8 %
:HMM:SCOP  430->579 1vcaA1 b.1.1.3 * 7.1e-12 30.0 %
:HMM:SCOP  580->690 1vcaA1 b.1.1.3 * 4.3e-18 25.5 %
:HMM:SCOP  685->778 1ev2E2 b.1.1.4 * 5.2e-13 30.1 %
:HMM:SCOP  780->969 1gxeA_ b.1.1.4 * 1.4e-18 33.3 %
:HMM:SCOP  972->1064 1f6fB2 b.1.2.1 * 1.3e-16 34.4 %
:RPS:PFM   25->120 PF07686 * V-set 6e-04 30.9 %
:RPS:PFM   143->211 PF08205 * C2-set_2 2e-07 30.4 %
:RPS:PFM   231->313 PF07679 * I-set 2e-06 34.8 %
:RPS:PFM   475->524 PF03410 * Peptidase_M44 5e-04 48.8 %
:RPS:PFM   599->672 PF08205 * C2-set_2 3e-04 31.6 %
:RPS:PFM   692->778 PF07679 * I-set 1e-04 28.9 %
:RPS:PFM   791->857 PF07679 * I-set 3e-08 43.1 %
:RPS:PFM   977->1050 PF00041 * fn3 2e-06 33.8 %
:HMM:PFM   21->108 PF07679 * I-set 8.6e-10 30.7 75/90  
:HMM:PFM   238->321 PF07679 * I-set 7.6e-12 25.0 80/90  
:HMM:PFM   696->778 PF07679 * I-set 3.7e-09 31.7 82/90  
:HMM:PFM   783->857 PF07679 * I-set 1.7e-10 34.2 73/90  
:HMM:PFM   888->963 PF07679 * I-set 1.2e-09 30.4 69/90  
:HMM:PFM   138->212 PF08205 * C2-set_2 1.1e-11 32.4 74/89  
:HMM:PFM   347->418 PF08205 * C2-set_2 2.6e-06 24.3 70/89  
:HMM:PFM   449->474 PF08205 * C2-set_2 0.00034 30.8 26/89  
:HMM:PFM   600->674 PF08205 * C2-set_2 2.1e-07 21.1 71/89  
:HMM:PFM   976->1053 PF00041 * fn3 1.3e-11 26.0 77/85  
:HMM:PFM   1078->1141 PF06697 * DUF1191 0.00077 21.0 62/276  
:BLT:SWISS 27->359,533->1050 NPHN_RAT 1e-41 28.3 %
:TM
:REPEAT 4|22->170|240->370|441->619|787->907
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID CAB63432.1 GT:GENE C26G2.1 GT:PRODUCT Ribosomal protein L3 GT:ORG cele0 GT:DATABASE WS208 WP:CE CE19703 WP:PRODUCT Ribosomal protein L3 WP:LOCUS WBGene00007750 GB:PROTEIN_ID CAB63432.1 LENGTH 1270 SQ:AASEQ MLSQAILLWLFGSIHISSQFFLESPSNLSTIAGESITFRCSAEKSPEPIVYSQWKSNTGSLLGYHQEGILPGHQGRFSYIKQNAEELHLKITHVNLDDDGEYECQMLHPEEGPIRAKSFLNIIVPPQLVYFSNYQPNSIIAVKENTPLNITCVVPNVKPEPEVLWYMDGKVMSRDVKQASTPHLNKTFTVYTSLVVQSDRNDHGKVITCEAFQKETDIRITTNTTLDVLFPPSDPTVEILRNPSALRSGDNVTIACSVTGGNPPPDVFWYHENKRLQSHSTLDTRSKEIKNIYSFIASQNDNMAEYECRANNSRTGNPKRKAMKLEVNYPPASVELFGESNIRYGSSANIQCKSLPSNPASQITWIINGRSVPTPTQREFVVENGIVSSSNVSVHSNELSVEAHQINVECMATNPEGSSAKQHVIKIIAPPKAPIITGLEDRKFFEGDIVNVTCEAQGGNPLAELSWYRGSEKHLVKGRKKMKWSQVKKKLVMSLLCLCEVVIMNFFRFSKNVFYFFRFTLFIECGVNGAHNEVAGFSSYSTLALRVDRTMNTQRLKCEATNAALDEPLIESQYLSVYYPPRRVLIRPADSGDQRLLVGKSARLVCGTLSSNPAAHISWQFSRATDDNKVHLGDVSLNETTRDNGFNVENVLSFTPTEEYDGTVVHCIANHPEWKHSVNTSFPLNVMYPPKMLVNDPVTVVMSEGDSFKENLTVRGNPAISLWQWRKNGVPFDHTIGRVFARGAVLSGKQLLSTDAGVYTLTATNSVGSTNITIKLAVEYSARITSISTPVIAATGDTVLLECEADGEPSKANMIHWYKNGEILAAQHRGHKKAILRLNATEQQSGEYTCKADNGIGVPAEGQTFLLVNSAPRVLPVARYAKTAGILGGVAKARCKVYAVPTVEFVWEKDEQLIKKNSSKYSIVNTQIDYSTYESTLWIKNIVPDDYTKKVKCIARNSFGTDHLSIPIIPPTHPDEPFNLTMTNSTLNTISVAWEPRFDGGSDQIFEVKYRRQNDDLIHLVNTTHTNLRLSGLATANTYFFQIRSINARGFASSWTSPVIFATLNEDGVNVAMIRNEKLKLTTWIPYILIFIVLFMLLNVVICCFVCNRTKKRKLREKTEMARTAINGGDVRQVQMYGTMMGNDGMSRRDIDDRPEMSEDEHSVRTMIEVSPNGYMQPIEPMLYESTGLLEYDYQTRSYMGSSQGTRSMTYANVPYPEPPQPSYHSNWNSLQRQSNNNTSPQHHLSTFINPNMGVRAGPINYAQLDGDLV BL:SWS:NREP 1 BL:SWS:REP 27->359,533->1050|NPHN_RAT|1e-41|28.3|817/1234| TM:NTM 3 TM:REGION 1->23| TM:REGION 491->513| TM:REGION 1080->1102| NREPEAT 1 REPEAT 4|22->170|240->370|441->619|787->907| SEG 381->402|vvengivsssnvsvhsnelsve| SEG 425->436|ikiiappkapii| SEG 1109->1120|rtkkrklrekte| BL:PDB:NREP 3 BL:PDB:REP 13->365|3b43A|2e-13|22.9|320/569| BL:PDB:REP 447->961|3b43A|2e-15|25.4|485/569| BL:PDB:REP 988->1061|2dtgE|4e-06|38.9|72/807| RP:PDB:NREP 3 RP:PDB:REP 21->378|1bihA|1e-24|13.9|338/391| RP:PDB:REP 581->966|1bihA|7e-23|14.0|356/391| RP:PDB:REP 974->1064|2ck2A|1e-11|14.4|90/94| RP:PFM:NREP 8 RP:PFM:REP 25->120|PF07686|6e-04|30.9|94/113|V-set| RP:PFM:REP 143->211|PF08205|2e-07|30.4|69/87|C2-set_2| RP:PFM:REP 231->313|PF07679|2e-06|34.8|67/89|I-set| RP:PFM:REP 475->524|PF03410|5e-04|48.8|41/589|Peptidase_M44| RP:PFM:REP 599->672|PF08205|3e-04|31.6|68/87|C2-set_2| RP:PFM:REP 692->778|PF07679|1e-04|28.9|86/89|I-set| RP:PFM:REP 791->857|PF07679|3e-08|43.1|65/89|I-set| RP:PFM:REP 977->1050|PF00041|2e-06|33.8|74/85|fn3| HM:PFM:NREP 11 HM:PFM:REP 21->108|PF07679|8.6e-10|30.7|75/90|I-set| HM:PFM:REP 238->321|PF07679|7.6e-12|25.0|80/90|I-set| HM:PFM:REP 696->778|PF07679|3.7e-09|31.7|82/90|I-set| HM:PFM:REP 783->857|PF07679|1.7e-10|34.2|73/90|I-set| HM:PFM:REP 888->963|PF07679|1.2e-09|30.4|69/90|I-set| HM:PFM:REP 138->212|PF08205|1.1e-11|32.4|74/89|C2-set_2| HM:PFM:REP 347->418|PF08205|2.6e-06|24.3|70/89|C2-set_2| HM:PFM:REP 449->474|PF08205|0.00034|30.8|26/89|C2-set_2| HM:PFM:REP 600->674|PF08205|2.1e-07|21.1|71/89|C2-set_2| HM:PFM:REP 976->1053|PF00041|1.3e-11|26.0|77/85|fn3| HM:PFM:REP 1078->1141|PF06697|0.00077|21.0|62/276|DUF1191| GO:PFM:NREP 3 GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF03410|IPR005072| GO:PFM GO:0008270|"GO:zinc ion binding"|PF03410|IPR005072| GO:PFM GO:0019067|"GO:viral assembly, maturation, egress, and release"|PF03410|IPR005072| RP:SCP:NREP 7 RP:SCP:REP 19->105|1g0yR3|3e-11|8.0|87/111|b.1.1.4| RP:SCP:REP 142->370|2cb2A1|3e-10|5.6|211/307|d.58.4.17| RP:SCP:REP 575->701|1bd2E2|2e-06|9.1|121/129|b.1.1.2| RP:SCP:REP 684->779|1fhgA|2e-11|20.0|95/102|b.1.1.4| RP:SCP:REP 764->872|1wgoA|4e-12|12.3|106/123|b.1.3.1| RP:SCP:REP 866->971|1hxmB2|2e-05|14.7|100/107|b.1.1.2| RP:SCP:REP 965->1066|1x5fA1|1e-12|13.9|101/107|b.1.2.1| HM:SCP:REP 18->131|1moeA1|2.7e-12|29.2|113/119|b.1.1.1|1/5|Immunoglobulin| HM:SCP:REP 125->232|1vcaA1|1.2e-19|29.4|102/0|b.1.1.3|2/9|Immunoglobulin| HM:SCP:REP 234->329|1vcaA1|1.3e-14|29.2|96/0|b.1.1.3|3/9|Immunoglobulin| HM:SCP:REP 330->418|1vcaA1|2.6e-10|21.8|87/0|b.1.1.3|4/9|Immunoglobulin| HM:SCP:REP 430->579|1vcaA1|7.1e-12|30.0|100/0|b.1.1.3|5/9|Immunoglobulin| HM:SCP:REP 580->690|1vcaA1|4.3e-18|25.5|102/0|b.1.1.3|6/9|Immunoglobulin| HM:SCP:REP 685->778|1ev2E2|5.2e-13|30.1|93/110|b.1.1.4|7/9|Immunoglobulin| HM:SCP:REP 780->969|1gxeA_|1.4e-18|33.3|120/130|b.1.1.4|8/8|Immunoglobulin| HM:SCP:REP 972->1064|1f6fB2|1.3e-16|34.4|93/103|b.1.2.1|1/1|Fibronectin type III| OP:NHOMO 2651 OP:NHOMOORG 65 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------*wna**ROFFAQmO**C*H***7*v*LICFpDVrXFZIDD*C9*NvSeU88H3B6HC*VY*ABE5------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1170 STR:RPRED 92.1 SQ:SECSTR ##HHHHHHEEEcHHHHccEEEcccccEEEEETTccEEEcccEEccccccEEEEEEEEccccccTTTcEEccTTcTTTTTEEEcTTcccEEEccccGGGcEEEEEEEEEETTEEEEcccEEEEEEEEEccccEEEEEccEEcccTTEEEEEcccccEEEcccEEEEEEEETTccGGGccccccTTEEEcTTccEEEEEEcGGGccccEEEEEccEEEEEEEEccccccccccccccEEEEEcccEEEETTccEEEEEEEEEcccccccEEEETTEEccccTTccEEcccccTTcEEccccGGGcEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccEEEEcTTccEEEEcEEEEEEcccccEEEETTEEcccccEEccEEEEEGGGTEEEEEEEEEEccccccccccGGGGGTTccc###########################TccEEEEEEEEc#ccccEEEEEcccccccccccEEEEccTTEEEEEEcccEEEEEEEcEEccccccEEEETTccEEEEEEcTTccEEEEEccccEEEEcccEEEEccccGGGcEEEEEEcTTccEEEEEEEEEcccccccccccccEcEEEccccccccccccccccccccEEEETEEcccTEEEETTEEccccTTEEEcTTcEEEEccccHHHHcEEEEEEEEEccccEEEEEEEEEEEEccccccccccccccEEcccEEEEEEcccccccccEEEEEETTcccTcEEEEETTTEEEEEEEcccGGGcEEEEEEEEccccEEEEEEEEcEEEEEEEEEccccEEEETTccEEEEcEEEEEcccEccEEccEEccccTTccccccccTEEEcccGGGcEEEEEEEEcccccccEEEEEEEEccccccEEEccccccEEEEEEEEcccccEEEEEEEEEcccccEEEEEcccEEEEccEEEEEEEEETTccTTccccccEEEEEEEEETTEEEEEEEEEcHHHHccccccEEEEEEEcTTccEEEEEEEccTTccccTTccEEEEEEEEEccccccEEEEcccEEEEEccTTEEEEEEEEEcccccccccccEEEEcccccccccccTTcccccccTTcEGGGGcTTcccGGGccGGGccEEEEEEEccccccGGGGGTcTTHHHHHHHHHTTccTTccccccHHHHHTcccGGGTccTTccccHHHHHHHHHHHHcTTcEEEEEEEcTTccGG###################################################################### DISOP:02AL 824-832, 1053-1079, 1152-1158, 1231-1238| PSIPRED ccccEEEEEEEEEEEccccEEEEcccEEEEEccccEEEEEEEEcccccEEEEEEEEccEEEccccccccccccccEEEEEEcccccEEEEEccccHHHcEEEEEEEEEccccEEEEEEEEEEEEccccEEccccccccEEEEEccccEEEEEEEccccccEEEEEEEccEEcccccEEEEEEEcccEEEEEEEEEEEEcccHHcEEEEEEEEEccccEEEEEEEEEEEEEccccEEEEEccccEEEEccccEEEEEEEEccccccEEEEEEccEEcccccEEEEEEEccccEEEEEEccHHHcEEEEEEEEEcccccEEEEEEEEEEEEccEEEEccccEEEcccccEEEEEEEEcccccEEEEEEEccEEccccccEEEEEcccEEEEEEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccccccEEEEccccEEEEEEEEccccccEEEEEEccEEEEcccccEEEEEEccccccEEEEEEEccccccEEEcccccEEEEccEEEEEEccccccccEEEEccccEEEEEEccHHHcEEEEEEEEEcccccEEEEEEEEEEEEcccEEEEcccccccEEEEccccEEEEEEEccccccEEEEEEEccccccccccccccccccccccccEEEccEEEEEEccHHHcEEEEEEEEEcccccEEEEEEEEEEEEccEEEEccccEEEEEcccEEEEEEEEEccccEEEEEEEEccEEccccccEEEEcccEEEEEEccHHHcEEEEEEEEccccEEEEEEEEEEEEccEEEEccccEEEEccccEEEEEEEEccccccEEEEEEEccEEccccccccccEEEEEEccHHHcEEEEEEEEEccccccEEEEEEEEcccccccccccccEEEEEccccEEEEEEEEEcccEEEEEEEccEEEcccccEEEEEEEEEccccccEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEccccEEEEEccccccccEEEEEEEEEccccccccccEEEEEEcccccccccccccccEEEEEEcccEEEEEEEHHHHHccEEEEEEEEccHHHcccccEEEcccccccEEEEEEEEEEEEccccccccccccccccccccEEEEEEEEEcccEEEEEccHHHHHcccccccccccHHEEEccccEEEEEEEEcccccccccEEccccHHHHcccccccccHHHEEEEEcccccEEEccccEEEEccccc //