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Caenorhabditis elegans (nematode) (cele0)
Gene : C39E6.4
DDBJ      :             similar to C. elegans proteins B0280.5, R02F2.4 and C07G2.1
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  65/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.1.9
:341 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   201->261 1fttA PDBj 8e-16 55.7 %
:BLT:PDB   244->272 2nzzA PDBj 1e-04 51.7 %
:RPS:PDB   196->259 2da1A PDBj 3e-20 25.0 %
:RPS:SCOP  10->32 2amxA1  c.1.9.1 * 2e-04 47.8 %
:RPS:SCOP  192->257 1mnmC  a.4.1.1 * 5e-18 28.8 %
:HMM:SCOP  192->270 2lfbA_ a.4.1.1 * 9.4e-21 41.8 %
:RPS:PFM   202->257 PF00046 * Homeobox 8e-08 51.8 %
:HMM:PFM   202->258 PF00046 * Homeobox 5.2e-24 54.4 57/57  
:BLT:SWISS 198->309 HMX_STRPU 4e-25 58.9 %
:PROS 234->257|PS00027|HOMEOBOX_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID AAM51525.1 GT:GENE C39E6.4 GT:PRODUCT similar to C. elegans proteins B0280.5, R02F2.4 and C07G2.1 GT:ORG cele0 GT:DATABASE WS208 WP:CE CE30891 WP:PRODUCT similar to C. elegans proteins B0280.5, R02F2.4 and C07G2.1 WP:LOCUS WBGene00003377 GB:PROTEIN_ID AAM51525.1 LENGTH 341 SQ:AASEQ MPTSVMNLPIDMTTMSSQERLEKMSQLPKIELMEEEEEEEMKPSSDNKIKFNISELLEDDRKPTTQSSPSASSEDSTNEIEQTAFNFNFDPKMNPISALLQLQQTFLNVGNQQNMISPLTMFPFFGLPTAQLMHFKNMSNPDVNIQSDNGEEKDEKSEGKDGETRDSTGGSPLESDAEDDDDIGRGSDDEANSSDPSQNRKKKTRTVFSRSQVSQLEMMFECKRYLSSQERSNLAQKLHLTETQVKIWFQNRRNKFKRQAQTDDTNISLQMHRANVFSIPATTALTSPILTIPTTSAGVNMRNMISSPMDASATAAARFLFGFGTLQAQQNLNASAQAQNM BL:SWS:NREP 1 BL:SWS:REP 198->309|HMX_STRPU|4e-25|58.9|112/405| PROS 234->257|PS00027|HOMEOBOX_1|PDOC00027| SEG 34->40|eeeeeee| SEG 147->163|sdngeekdeksegkdge| SEG 175->191|sdaeddddigrgsddea| SEG 326->340|lqaqqnlnasaqaqn| BL:PDB:NREP 2 BL:PDB:REP 201->261|1fttA|8e-16|55.7|61/68| BL:PDB:REP 244->272|2nzzA|1e-04|51.7|29/37| RP:PDB:NREP 1 RP:PDB:REP 196->259|2da1A|3e-20|25.0|64/70| RP:PFM:NREP 1 RP:PFM:REP 202->257|PF00046|8e-08|51.8|56/56|Homeobox| HM:PFM:NREP 1 HM:PFM:REP 202->258|PF00046|5.2e-24|54.4|57/57|Homeobox| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00046|IPR001356| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00046|IPR001356| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00046|IPR001356| RP:SCP:NREP 2 RP:SCP:REP 10->32|2amxA1|2e-04|47.8|23/357|c.1.9.1| RP:SCP:REP 192->257|1mnmC|5e-18|28.8|66/77|a.4.1.1| HM:SCP:REP 192->270|2lfbA_|9.4e-21|41.8|79/0|a.4.1.1|1/1|Homeodomain-like| OP:NHOMO 3478 OP:NHOMOORG 65 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------******neXQPg*b**W*k***1***9eWM*Yt*vEicRIpSE*k*ry*VZTrgiRKyTV*NTr7------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 95 STR:RPRED 27.9 SQ:SECSTR ################################################################################################################################################################################################cccccccccccccccccHHHHHHHHHHHHHcccccTTHHHHHHHHHcccHHHHHHHHHHHHHHHHccGGcEEETTccEHHHHHHccccccccccc###################################################### DISOP:02AL 1-6, 8-207, 256-341| PSIPRED ccccccccccccccccccccccccccccccccccccHHHcccccccccccEEEHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHEEEEEEccHHHHHHHHHHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //