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Caenorhabditis elegans (nematode) (cele0)
Gene : C50B8.2
DDBJ      :             RNA binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  27/199 : Viruses  0/175   --->[See Alignment]
g.52.1
:308 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->108 1m4mA PDBj 4e-09 35.7 %
:BLT:PDB   168->248 1f3hB PDBj 5e-12 38.0 %
:RPS:PDB   14->129 3cm2D PDBj 1e-16 29.6 %
:RPS:PDB   157->258 1e31A PDBj 5e-17 33.3 %
:RPS:SCOP  19->104 1e31A  g.52.1.1 * 1e-19 33.3 %
:RPS:SCOP  168->259 1e31A  g.52.1.1 * 1e-23 38.2 %
:HMM:SCOP  16->128 1m4mA_ g.52.1.1 * 1.4e-22 35.1 %
:HMM:SCOP  157->303 1e31A_ g.52.1.1 * 2.3e-23 27.4 %
:RPS:PFM   27->98 PF00653 * BIR 2e-12 41.4 %
:RPS:PFM   170->240 PF00653 * BIR 3e-11 38.9 %
:HMM:PFM   27->97 PF00653 * BIR 4.9e-17 38.6 70/72  
:HMM:PFM   170->241 PF00653 * BIR 3.8e-18 40.8 71/72  
:BLT:SWISS 25->128 BI52A_XENLA 2e-10 30.7 %
:BLT:SWISS 151->244 BIR51_XENTR 4e-14 43.8 %
:REPEAT 2|2->127|145->270
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID CAB01130.1 GT:GENE C50B8.2 GT:PRODUCT RNA binding protein GT:ORG cele0 GT:DATABASE WS208 WP:CE CE08882 WP:PRODUCT RNA binding protein WP:LOCUS WBGene00000250 GB:PROTEIN_ID CAB01130.1 LENGTH 308 SQ:AASEQ MPYTFENSEALLKNLKDAAPYISAAERFASFKGFVYDKRINIACTSEKLARAGFYSTASPEFPASAKCPFCMLEINFEQCDDPWEKHKSGSPHCEFVMIGEIEESELSFRIISNLAIRHATVRLYEELLGIVATLENGDIANENPITRADATRKLISFRSSSKLLTFDHRLATFQNFIFDKKRNVKCTSKKLAKAGWFSIANKKDKTSAKCPFCLVELDFDESDDPWEEHQKFSASCDFIKLGKLDEKKWTENEALMLGARITIMQKYEKGSWLIDELEKENRIDEIIKIRKIMIKPNHVLKRRRCSI BL:SWS:NREP 2 BL:SWS:REP 25->128|BI52A_XENLA|2e-10|30.7|101/157| BL:SWS:REP 151->244|BIR51_XENTR|4e-14|43.8|89/160| NREPEAT 1 REPEAT 2|2->127|145->270| SEG 279->296|ekenrideiikirkimik| BL:PDB:NREP 2 BL:PDB:REP 27->108|1m4mA|4e-09|35.7|80/112| BL:PDB:REP 168->248|1f3hB|5e-12|38.0|79/135| RP:PDB:NREP 2 RP:PDB:REP 14->129|3cm2D|1e-16|29.6|98/102| RP:PDB:REP 157->258|1e31A|5e-17|33.3|99/136| RP:PFM:NREP 2 RP:PFM:REP 27->98|PF00653|2e-12|41.4|70/71|BIR| RP:PFM:REP 170->240|PF00653|3e-11|38.9|69/71|BIR| HM:PFM:NREP 2 HM:PFM:REP 27->97|PF00653|4.9e-17|38.6|70/72|BIR| HM:PFM:REP 170->241|PF00653|3.8e-18|40.8|71/72|BIR| GO:PFM:NREP 2 GO:PFM GO:0005622|"GO:intracellular"|PF00653|IPR001370| GO:PFM GO:0005622|"GO:intracellular"|PF00653|IPR001370| RP:SCP:NREP 2 RP:SCP:REP 19->104|1e31A|1e-19|33.3|83/136|g.52.1.1| RP:SCP:REP 168->259|1e31A|1e-23|38.2|89/136|g.52.1.1| HM:SCP:REP 16->128|1m4mA_|1.4e-22|35.1|111/112|g.52.1.1|1/2|Inhibitor of apoptosis (IAP) repeat| HM:SCP:REP 157->303|1e31A_|2.3e-23|27.4|135/136|g.52.1.1|2/2|Inhibitor of apoptosis (IAP) repeat| OP:NHOMO 44 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------1-----------------------------------------------------------------------------21--2-----------3-281-112----1--1------1--1-1211----21-1---12211------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 243 STR:RPRED 78.9 SQ:SECSTR ####cccGGGccccccccGGGccHHHHHHTTTTcccTcccTccccHHHHHHTTEEEcccTTccTcEEETTTccEEcccTTccHHHHHHHHcTTcHHHHHHHHHHHcHH##HHHHHHHHHHHHHHHHHHT#########ccHHHHTTTccccccccccccGGGGGGcHHHHHHTcccccccccTTccccHHHHHHTTEEEcccccccccEEETTTccEEcccTTccHHHHHHHHcTTcGGGTcccccGGGccHHHHHHH################################################## DISOP:02AL 1-2, 12-13, 291-304, 307-308| PSIPRED ccEEccccEEEEcccccccHHHHHHHHHHHHHcccccccccccccHHHHHHccEEEccccccccEEEEEEEccEEEccccccHHHHHHHHcccccEEEEccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccHHHHHHccEEEccccccccEEEEEccccEEcccccccHHHHHHHHcccccEEEEEcccHHHHEEHHHHHccccHHEEEEccccccccccccccHHHHHHHHHHHcccccccccccccccc //