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Caenorhabditis elegans (nematode) (cele0)
Gene : C50F2.3
DDBJ      :             amino acid permease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  188/199 : Viruses  0/175   --->[See Alignment]
a.118.8
:855 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->311 2ooeA PDBj 1e-04 30.1 %
:BLT:PDB   356->428 1na0A PDBj 8e-04 31.3 %
:RPS:PDB   64->206 2e2eA PDBj 1e-04 9.2 %
:RPS:PDB   356->623 2c0mA PDBj 4e-12 13.5 %
:RPS:SCOP  40->310 2ondA1  a.118.8.7 * 2e-12 18.5 %
:RPS:SCOP  333->428 1ihgA1  a.118.8.1 * 2e-05 10.0 %
:RPS:SCOP  442->697 2ondA1  a.118.8.7 * 7e-16 20.9 %
:HMM:SCOP  265->475 1kt1A1 a.118.8.1 * 1.9e-08 20.0 %
:HMM:SCOP  377->705 1qqeA_ a.118.8.1 * 6.9e-10 21.4 %
:RPS:PFM   106->215 PF05843 * Suf 4e-07 25.5 %
:RPS:PFM   636->735 PF05843 * Suf 1e-06 27.6 %
:HMM:PFM   565->783 PF05843 * Suf 1.6e-05 12.2 205/284  
:HMM:PFM   265->291 PF07719 * TPR_2 6.7e-05 22.2 27/34  
:HMM:PFM   403->428 PF07719 * TPR_2 9.4e-05 30.8 26/34  
:BLT:SWISS 12->749 SYF1_MOUSE 0.0 51.2 %
:REPEAT 2|557->623|632->695
:REPEAT 2|170->312|313->451
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID AAB37794.1 GT:GENE C50F2.3 GT:PRODUCT amino acid permease GT:ORG cele0 GT:DATABASE WS208 WP:CE CE08909 WP:PRODUCT amino acid permease WP:LOCUS WBGene00016837 GB:PROTEIN_ID AAB37794.1 LENGTH 855 SQ:AASEQ MADKENATKIEKMPNSETMKGISSEDVPFEEDIIRNPTSVNCWQRYIDHKLQNKSPAKQMFLIYERALAVFERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKAREDYVEYLIERDQIDEAAKELTTLVNQDQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNVDAIIRQGIYRYTDQVGFLWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEEREVSIMMQEVEQSGDPEEEVDLEWMFQRYQHLMERKNELMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQRACVVPKPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVKFWDTWKNFEVAHGNEATVRDMLRVRRSVEASYNVNVTLTSVQMRVDAERKAQETTTSSNPMDSLDQQQQQPSDGAGSITQVSMNKGNISFVRGAGKTVQQNTTENPDEIDLDEDDDDEEDDGGDADISVKVVPAQIFGNLKLAEEEEEA BL:SWS:NREP 1 BL:SWS:REP 12->749|SYF1_MOUSE|0.0|51.2|736/855| NREPEAT 2 REPEAT 2|557->623|632->695| REPEAT 2|170->312|313->451| SEG 772->776|qqqqq| SEG 813->833|deidldeddddeeddggdadi| BL:PDB:NREP 2 BL:PDB:REP 30->311|2ooeA|1e-04|30.1|266/528| BL:PDB:REP 356->428|1na0A|8e-04|31.3|67/119| RP:PDB:NREP 2 RP:PDB:REP 64->206|2e2eA|1e-04|9.2|141/171| RP:PDB:REP 356->623|2c0mA|4e-12|13.5|252/297| RP:PFM:NREP 2 RP:PFM:REP 106->215|PF05843|4e-07|25.5|110/204|Suf| RP:PFM:REP 636->735|PF05843|1e-06|27.6|95/204|Suf| HM:PFM:NREP 3 HM:PFM:REP 565->783|PF05843|1.6e-05|12.2|205/284|Suf| HM:PFM:REP 265->291|PF07719|6.7e-05|22.2|27/34|TPR_2| HM:PFM:REP 403->428|PF07719|9.4e-05|30.8|26/34|TPR_2| GO:PFM:NREP 4 GO:PFM GO:0005634|"GO:nucleus"|PF05843|IPR008847| GO:PFM GO:0006397|"GO:mRNA processing"|PF05843|IPR008847| GO:PFM GO:0005634|"GO:nucleus"|PF05843|IPR008847| GO:PFM GO:0006397|"GO:mRNA processing"|PF05843|IPR008847| RP:SCP:NREP 3 RP:SCP:REP 40->310|2ondA1|2e-12|18.5|229/308|a.118.8.7| RP:SCP:REP 333->428|1ihgA1|2e-05|10.0|90/169|a.118.8.1| RP:SCP:REP 442->697|2ondA1|7e-16|20.9|239/308|a.118.8.7| HM:SCP:REP 265->475|1kt1A1|1.9e-08|20.0|150/168|a.118.8.1|2/3|TPR-like| HM:SCP:REP 377->705|1qqeA_|6.9e-10|21.4|238/290|a.118.8.1|2/2|TPR-like| OP:NHOMO 396 OP:NHOMOORG 188 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 12-1222-311-1222222222222222212222222222122222222222222222222221111111111221112111111122-22123222222231222-212322223-21-212322-323N21222221122222-21112213311221352322-22122322-222K2221233452522221121 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 685 STR:RPRED 80.1 SQ:SECSTR #############################HHHHHHcTTcHHHHHHHHHHHHHHHHHTTccTTTcccccHHHHHHHHHccccHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHTTTccHHHHHHHHHHHHcTTTTcHHHHHHHHHHHHHTTcHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHTTHTTccEEEEEEETTTTEEEEEEEETTEEEEEETcccTTccEEETTTccccccccccTTTTTTHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHTTTTTcccccccccccEGTccccHHHHTcGGGcccccccccTTTTcccHHHHHHHHHTcHHHHHHHHHHHHHHHcTTcHHHTcHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHcTTTcTTcHHHHHHHHHHHHHTTcHHHHHHHHHHHHHccHHHHTTccccHHcTTcccHHHHHHHHHHHHHHTcHHHHHHHHHHHHTTcTTcHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHccHTTcHHHHHHHHHHHHHHcHTTcHHHHHHHHHHHHHHHHHTcccTTTccccccHHHHHHHHHHHHHHTcGHTTTcTTHHHHHHHHHHccTTccccHHHHHHHHHHHHTTccHHHHHHHHHHHTTccHTTHHHHHHHHHHHHHHHHHcccccTTccEEEEEc############################################################################################################################################# DISOP:02AL 1-2, 753-814, 846-855| PSIPRED cccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccc //