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Caenorhabditis elegans (nematode) (cele0)
Gene : K06A5.6
DDBJ      :             Leucine Rich Repeat (2 copies) (3 domains)
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  577/915 : Eukaryota  173/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:419 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   47->415 2jifB PDBj e-137 62.6 %
:RPS:PDB   47->411 2dvlA PDBj 1e-98 41.4 %
:RPS:SCOP  47->261 1rx0A2  e.6.1.1 * 2e-63 33.8 %
:RPS:SCOP  263->411 1bucA1  a.29.3.1 * 2e-44 45.0 %
:HMM:SCOP  39->276 1w07A3 e.6.1.2 * 5.7e-77 45.8 %
:HMM:SCOP  263->411 1bucA1 a.29.3.1 * 8.8e-52 40.9 %
:RPS:PFM   51->151 PF02771 * Acyl-CoA_dh_N 7e-17 36.6 %
:RPS:PFM   156->207 PF02770 * Acyl-CoA_dh_M 7e-12 53.8 %
:RPS:PFM   263->409 PF00441 * Acyl-CoA_dh_1 5e-34 45.6 %
:HMM:PFM   263->409 PF00441 * Acyl-CoA_dh_1 2.8e-53 44.2 147/150  
:HMM:PFM   41->151 PF02771 * Acyl-CoA_dh_N 6.2e-31 39.6 111/113  
:HMM:PFM   156->206 PF02770 * Acyl-CoA_dh_M 1.3e-22 47.1 51/52  
:BLT:SWISS 51->415 ACDSB_RAT e-139 63.6 %
:PROS 158->170|PS00072|ACYL_COA_DH_1
:PROS 370->389|PS00073|ACYL_COA_DH_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID AAK21433.1 GT:GENE K06A5.6 GT:PRODUCT Leucine Rich Repeat (2 copies) (3 domains) GT:ORG cele0 GT:DATABASE WS208 WP:CE CE11776 WP:PRODUCT Leucine Rich Repeat (2 copies) (3 domains) WP:LOCUS WBGene00019433 GB:PROTEIN_ID AAK21433.1 LENGTH 419 SQ:AASEQ MSSLSRSLLISRSAAPVVATMSTKPRAHIDGHVPSPLQQLSEEESSIVGTVRRFAVNVIKPLVREMDDKSQMHQSVITGTFENGLMGIEIPEKYGGPGSSFFDAVLVIEELAKVDPSVSVFVDVQNTLVAPLIIQLGTEEQKQKYLPKIVTEAIGSFALSETGSGSDAFALKTTAKKDGDDFVISGSKMWITNAGHAQFFLVFANADSAKGYKGITCFLVDRNQEGVSVGKKEDKLGIRASSTCSVHFDNVRVHKSSILGEYGKGYKYAIECLNAGRIGIGAQMLGLAQGCFDQTIPYLQQREQFGQRLIDFQGMQHQIGQTRMEIEAARLLVYNAARMKQNGLPFVREAAMAKLFASQVATTATSKCVEWLGGVGFTKEFPVEKFYRDSKIGTIYEGTSNIQLNTIAKLVDIEYQQKA BL:SWS:NREP 1 BL:SWS:REP 51->415|ACDSB_RAT|e-139|63.6|365/432| PROS 158->170|PS00072|ACYL_COA_DH_1|PDOC00070| PROS 370->389|PS00073|ACYL_COA_DH_2|PDOC00070| SEG 2->13|sslsrsllisrs| SEG 34->46|psplqqlseeess| BL:PDB:NREP 1 BL:PDB:REP 47->415|2jifB|e-137|62.6|369/377| RP:PDB:NREP 1 RP:PDB:REP 47->411|2dvlA|1e-98|41.4|360/370| RP:PFM:NREP 3 RP:PFM:REP 51->151|PF02771|7e-17|36.6|101/113|Acyl-CoA_dh_N| RP:PFM:REP 156->207|PF02770|7e-12|53.8|52/53|Acyl-CoA_dh_M| RP:PFM:REP 263->409|PF00441|5e-34|45.6|147/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 263->409|PF00441|2.8e-53|44.2|147/150|Acyl-CoA_dh_1| HM:PFM:REP 41->151|PF02771|6.2e-31|39.6|111/113|Acyl-CoA_dh_N| HM:PFM:REP 156->206|PF02770|1.3e-22|47.1|51/52|Acyl-CoA_dh_M| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 47->261|1rx0A2|2e-63|33.8|213/231|e.6.1.1| RP:SCP:REP 263->411|1bucA1|2e-44|45.0|149/151|a.29.3.1| HM:SCP:REP 39->276|1w07A3|5.7e-77|45.8|238/0|e.6.1.2|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 263->411|1bucA1|8.8e-52|40.9|149/151|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 7649 OP:NHOMOORG 780 OP:PATTERN 55----6888A88977-243532DA6661-7B-----------------------------6761--- 4557Z4-5111946b*oPP-Pq44rvPPPPPavt*tes**4iAp12441231778779--LHW1GGVNJQG--------384B-----11111122---41545664565--------------------------67689---C312-2113--------------125-------------89968--1E746666646666666664566656667CBAB11------54122222212222212211-2--1------------------------------------------------------------------111315444444444423222221-6-316-13-B91597-17---11-3-71-SLLW-----62ZQU555THTRLAA9A9AA7978-55C55G5DACY-B88987788999BHAVBACF6666D9J11111111B----9B6-----------------------------1OMWN18VKDQDDFJRDCDIIFCCPHLLLMDKUBabxtm35IJDD7HGGRGLLRd259----66-------212H883lHK-----------765-B-5--7887EA66----1-------1--------1-----54-9G497HC1676666AE6666B6E8688---221-------41511214445455444-444444443444444444322111112544245544353533522333233--222232212232---6222228778-KE43-----------1---KLNILFM8BAB2OOQQBQHKLHGGFGA8B111111111-111311111462337755555566------12CCA9BB----------1-------------------------1--11-1------ ----BCA-941-AAAEACAE999B89CCCAA9A878AA9A8AABCCA8789ACF8A7867775-1----1----1------11111---7B7A8877666998DCD-C89IEWBBGFA999AD9JC6J9U*E-FBQ6996D89HB4AB79D73HACCBPCIJ7LEE8B8DEFJHI3454Z43366B67I95644GAB9A ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 373 STR:RPRED 89.0 SQ:SECSTR ##############################################HHHHHHHHHHHTHHHHHHHHHHTTcccHHHHHHHHHTTGGGTTccGGGTcccccHHHHHHHHHHHHHHcHHHHHHHHHHTcHHHHHHHHHccHHHHHHTHHHHHTcccEEEEcccccccccGGGcccEEEEETTEEEEEEEEEEEETTTTccEEEEEEEETTccHTTEEEEEEEETTcTTEEEcccccccccTTccEEEEEEEEEEEEGGGEEccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEETTEEGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGcGGGcHHHHHHHHHGGGTTTccHHHHHHHHHHHHHcTccTTH DISOP:02AL 1-25, 416-419| PSIPRED ccHHHHHHHHHHHHcccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHcccccccccHHHcEEEEEEEccEEEEEEEEEEEEccccccEEEEEEEEccccccccEEEEEEEcccccEEEcccccccccccccccEEEEccEEEcHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccc //