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Caenorhabditis elegans (nematode) (cele0)
Gene : T26G10.1
DDBJ      :             RNA helicase
Swiss-Prot:DDX47_CAEEL  RecName: Full=Putative ATP-dependent RNA helicase T26G10.1;         EC=3.6.1.-;

Homologs  Archaea  51/68 : Bacteria  828/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:489 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   45->250 3berA PDBj 5e-78 65.5 %
:BLT:PDB   254->400 2hjvA PDBj 1e-25 44.2 %
:RPS:PDB   45->250 3berA PDBj 5e-38 65.5 %
:RPS:PDB   257->407 3earA PDBj 3e-31 37.1 %
:RPS:SCOP  57->388 1pjrA1  c.37.1.19 * 4e-44 11.9 %
:HMM:SCOP  65->125 1w36B1 c.37.1.19 * 0.00047 23.3 %
:HMM:SCOP  111->401 1wp9A2 c.37.1.19 * 5e-73 40.9 %
:RPS:PFM   68->230 PF00270 * DEAD 2e-30 45.9 %
:RPS:PFM   307->377 PF00271 * Helicase_C 9e-17 47.9 %
:HMM:PFM   69->235 PF00270 * DEAD 8.5e-53 43.0 165/167  
:HMM:PFM   302->378 PF00271 * Helicase_C 2e-29 40.3 77/78  
:BLT:SWISS 1->463 DDX47_CAEEL 0.0 100.0 %
:PROS 192->200|PS00039|DEAD_ATP_HELICASE
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID CAA82362.1 GT:GENE T26G10.1 GT:PRODUCT RNA helicase GT:ORG cele0 GT:DATABASE WS208 WP:CE CE00337 WP:PRODUCT RNA helicase WP:LOCUS WBGene00012059 GB:PROTEIN_ID CAA82362.1 LENGTH 489 SQ:AASEQ MSDSSSSDGEDNQKFLGNRKKNLTKKKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVENEVMVLVERTQEATENARIEMKEMDEKKKSGKKRRQNDDFGDTEESGGRFKMGIKSMGGRGGSGGGRGGKKKKMSK SW:ID DDX47_CAEEL SW:DE RecName: Full=Putative ATP-dependent RNA helicase T26G10.1; EC=3.6.1.-; SW:GN ORFNames=T26G10.1; SW:KW ATP-binding; Complete proteome; Helicase; Hydrolase;Nucleotide-binding; Nucleus; Ribosome biogenesis; RNA-binding;rRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->463|DDX47_CAEEL|0.0|100.0|463/489| GO:SWS:NREP 8 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0004386|"GO:helicase activity"|Helicase| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0005634|"GO:nucleus"|Nucleus| GO:SWS GO:0042254|"GO:ribosome biogenesis"|Ribosome biogenesis| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0006364|"GO:rRNA processing"|rRNA processing| PROS 192->200|PS00039|DEAD_ATP_HELICASE|PDOC00039| TM:NTM 1 TM:REGION 135->157| SEG 25->44|kkkvvteeiekddeedvkek| SEG 134->150|algsgigliaavivggv| SEG 433->446|emkemdekkksgkk| SEG 464->488|kmgiksmggrggsgggrggkkkkms| BL:PDB:NREP 2 BL:PDB:REP 45->250|3berA|5e-78|65.5|206/220| BL:PDB:REP 254->400|2hjvA|1e-25|44.2|147/158| RP:PDB:NREP 2 RP:PDB:REP 45->250|3berA|5e-38|65.5|206/220| RP:PDB:REP 257->407|3earA|3e-31|37.1|151/206| RP:PFM:NREP 2 RP:PFM:REP 68->230|PF00270|2e-30|45.9|159/167|DEAD| RP:PFM:REP 307->377|PF00271|9e-17|47.9|71/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 69->235|PF00270|8.5e-53|43.0|165/167|DEAD| HM:PFM:REP 302->378|PF00271|2e-29|40.3|77/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 1 RP:SCP:REP 57->388|1pjrA1|4e-44|11.9|310/315|c.37.1.19| HM:SCP:REP 65->125|1w36B1|0.00047|23.3|60/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 111->401|1wp9A2|5e-73|40.9|269/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 10617 OP:NHOMOORG 1078 OP:PATTERN ---2-2323323333213222-13--------1121211111123322-33241-1-2121211-112 1211433333332332322-23113322222233334555-42433532554333323--5532444676222222221142-11111666725443--6366548BA17--------------23213333331311111111113211322----12122221-2222311111111111141211--1124666666676776677434444777222435444444455333333333333333333334333333333333334333334222233333333333333333323333333333333333333333333-634655555556563422444444-2-132113335-1111--1---214-4323322212443434224434433333333333-3343343424424443453333334424443244444325555555546664334------------111111111111111111333325444455555554444445544443455544452444455554576555555463354333333322255574825253214333-444534544434364424--1-------1111111115111533AA8656B78ABBEEEEEDDDDDDCCDDDCC1-2232311111155655555555555565-55555555555556656665555544555555655555454456554555541544556644556114511111444436549323333233333333222222222267777778887777788773222222225AAAAAAAAA8BBBB44555555553333233-332233--------21322232---1--12---11121-11112111------33 UTNNVUR5*ROMSQUNQPMOOOOPPOPOOOOOONNNOQOONOOONNPPNNOOOONOOPOOOONNNNNNGOONNONOPKPQNOMNNMMN-MbSQQQTTOPOQOQbddBV*U*kugmixXVYPWcVtqS*U**l3ui*SXYSmUZhURaaTTdTNwWjYUba*wgZUTXkYe*hliUMabi*gfcTZwl**Q*qYYcXZZg --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---- STR:NPRED 388 STR:RPRED 79.3 SQ:SECSTR ############################################cTTEEEEEEEEEHHHHHHHHHccccccccccccccccEEEEEEccccccTTTHHHHHHHTHTTTTccEccEEEEEccHHHHHHHHHHHHHHTccccccEEEccTTcEEEcccccccccccEEEEEHHHHHHHTcccTcTcccEEEEETTTcccHHHHHHHHHHHHHTTTTTccEEEEEEcccTTccccccHHHHcccEEEEcccccccccETTEEEEEccccccEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEEcccEEEEEEEEccHHHHHHHHTEEEEEEEHHHHcHHHHHHHHTTcccEEcccccTTccccccccHHHHHHHHH######################################################### DISOP:02AL 1-4, 6-44, 418-489| PSIPRED ccccccccccccHHHHHHHHcccHHccccccccccccccccccccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHccccEEEEccHHHHHHHHccccEEEcccEEEEEEccHHHcccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccEEEEEcHHHcccccccccEEEEEcccccHHHcEEEcccccccccccEEEEEEcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccccccc //