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Caenorhabditis elegans (nematode) (cele0)
Gene : W04G3.3
DDBJ      :             RNA recognition motif. (aka RRM, RBD, or RNP domain)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
b.60.1
:360 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   187->349 3ebkA PDBj 2e-15 15.6 %
:RPS:SCOP  187->352 1gkaB  b.60.1.1 * 2e-14 17.4 %
:HMM:SCOP  189->349 1epbA_ b.60.1.1 * 3.2e-13 21.9 %
:RPS:PFM   25->81 PF04197 * Birna_RdRp 3e-04 35.1 %
:HMM:PFM   192->323 PF08212 * Lipocalin_2 0.00018 18.9 122/143  
:TM

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID CAA92025.2 GT:GENE W04G3.3 GT:PRODUCT RNA recognition motif. (aka RRM, RBD, or RNP domain) GT:ORG cele0 GT:DATABASE WS208 WP:CE CE31627 WP:PRODUCT RNA recognition motif. (aka RRM, RBD, or RNP domain) WP:LOCUS WBGene00012257 GB:PROTEIN_ID CAA92025.2 LENGTH 360 SQ:AASEQ MQRLTAVVFACVIGGVFLAAPDAPTFDSLPAGIDPTAKIGPPGTDDKALVKVGEVAESILDKLGFSTRDEKDIRRAPVPSSFFGSDDVNQVIEEANANRVDLQGITSGQIPGLAPIPVPGFPGPQDAPVIPGVNTIPGLSNFNYLVGQLFPQMIPPANTLLGSSISRILPKDTAKNIAKDVFRAVHPTAENVDTARMMGRWFQVINSPHVIREACTVSHFGALTNNTYSASFTILKFYREGNPNGSPRYALGYGFKSGETGQFVLHNSNSADAEPFWVIKMGPLNEYKQYDYAIVSTWVRYPVFVIARDPERFRKLHMKNVLEFLQQNNYINVMTKAFNMISPVDYEACQYTPTFSGTGK TM:NTM 1 TM:REGION 3->23| RP:PDB:NREP 1 RP:PDB:REP 187->349|3ebkA|2e-15|15.6|154/165| RP:PFM:NREP 1 RP:PFM:REP 25->81|PF04197|3e-04|35.1|57/847|Birna_RdRp| HM:PFM:NREP 1 HM:PFM:REP 192->323|PF08212|0.00018|18.9|122/143|Lipocalin_2| GO:PFM:NREP 2 GO:PFM GO:0003968|"GO:RNA-directed RNA polymerase activity"|PF04197|IPR007100| GO:PFM GO:0019079|"GO:viral genome replication"|PF04197|IPR007100| RP:SCP:NREP 1 RP:SCP:REP 187->352|1gkaB|2e-14|17.4|155/174|b.60.1.1| HM:SCP:REP 189->349|1epbA_|3.2e-13|21.9|146/0|b.60.1.1|1/1|Lipocalins| OP:NHOMO 11 OP:NHOMOORG 3 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------551------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 172 STR:RPRED 47.8 SQ:SECSTR #######################################################################################################################################################################################ccccccTTccHHHHcEEEEEEEcccGGGGcEEEEEEEETTTEEEEEEEcTTEEEEEEcTTccccEEEEEEEEEETTEEEEEEccTTGGGcEEEEEEEEccccEEEEEEccGGGTTcEEEEEEEEcTTTcccccHHHHHHHHHHHHHHHHHHHHHTTccGGGcEEcccccHHH##### DISOP:02AL 1-2, 79-81, 96-110| PSIPRED cHHHHHHHHHHHHccEEEEccccccccccccccccHHHccccccccHHcccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHcccEEEEEEccccccccccEEEcccccccccccEEEEEEEEEcccccccEEEEEccEEEccccEEEEEEEccccccccEEEEEEcccccccEEEEEEEEccccccEEEEEEcHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccEEEEcccEEEccc //