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Caenorhabditis elegans (nematode) (cele0)
Gene : Y25C1A.1
DDBJ      :             LIM domain containing proteins (2 domains)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
d.169.1
:578 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   108->233 1egiB PDBj 5e-05 19.5 %
:RPS:PDB   420->568 1byfA PDBj 8e-06 18.4 %
:RPS:SCOP  105->228 2afpA  d.169.1.1 * 1e-04 18.8 %
:HMM:SCOP  108->229 1ixxB_ d.169.1.1 * 1.1e-10 21.4 %
:HMM:SCOP  400->571 1tdqB_ d.169.1.1 * 4.2e-12 23.0 %
:HMM:PFM   107->145 PF05473 * Herpes_UL45 0.00019 31.6 38/200  
:HMM:PFM   426->475 PF00059 * Lectin_C 0.00084 18.8 48/108  

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID AAD12835.1 GT:GENE Y25C1A.1 GT:PRODUCT LIM domain containing proteins (2 domains) GT:ORG cele0 GT:DATABASE WS208 WP:CE CE21468 WP:PRODUCT LIM domain containing proteins (2 domains) WP:LOCUS WBGene00021288 GB:PROTEIN_ID AAD12835.1 LENGTH 578 SQ:AASEQ MSLMFALFLGILCSQKELYAQQITGGLIVDSGLQKACAQAGGVFRPRTDAQSVTGDICEMSFSVVTSDEADATNFCELYAPWRLRSVRIEKDVAGFTRTVCVVEATFTCGAGWIQMFGHCFRRLDKFSRHNQTEAKNICANLDGHKGSIAYLHHRYIVGVWKNFFKGISQIWVDGSETWDQYIVKTGSVDGRALALAFTGDTFDFSVMPNSLISIDPNLKLEVLCQYKPDLTPAEVNYLGRRYSEIYYPGVHVSDGVLIRSASHYTRSKTNLEVCKKVLKSFYITEIEPFMPTQEVMELLTNNRPKSSHFTRSGGEYPFNLYRDLIRPKECFGGAHTYEIPYANGSSKPFELPLREIIECDNMNSVAITHFAKGAAFVPMSDSQTAPVWCKFGKRMNYKIIAPEGWTPYVRSNGEVVAHKIFMEAASYDQALHWCRNENAKLGGFNDRKEFEAIAALITVHQTNRYYRLGAHQRDECDGVSGYTGIEGGTCYRDRIFGWIDNVASENIDESLWGDDEPDGGRRRSALGCWGSNCVQNTLVFSHFVNSHTDGIPRITDSFHDDRLPYVCTMDVTMIPIL RP:PDB:NREP 2 RP:PDB:REP 108->233|1egiB|5e-05|19.5|118/143| RP:PDB:REP 420->568|1byfA|8e-06|18.4|114/123| HM:PFM:NREP 2 HM:PFM:REP 107->145|PF05473|0.00019|31.6|38/200|Herpes_UL45| HM:PFM:REP 426->475|PF00059|0.00084|18.8|48/108|Lectin_C| RP:SCP:NREP 1 RP:SCP:REP 105->228|2afpA|1e-04|18.8|117/129|d.169.1.1| HM:SCP:REP 108->229|1ixxB_|1.1e-10|21.4|117/123|d.169.1.1|1/2|C-type lectin-like| HM:SCP:REP 400->571|1tdqB_|4.2e-12|23.0|126/126|d.169.1.1|2/2|C-type lectin-like| OP:NHOMO 19 OP:NHOMOORG 2 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------8B-------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 386 STR:RPRED 66.8 SQ:SECSTR ##################################################################################################HHHHHHHHHcccTTcEEcTTccEEEEEEcGcccHHHHHHHHHHTTcEEccccHHHHHTTTcTTcEEEEEEEcccTTccccccTTcccGGGcccEEEEEETTTTccEEEEEcccEEEEETTcccEEEEEEETTcccEEEEETTcccTTcccTTccccHHHHHHHHHTccEEcccccEEEEEEEEEccEEEEEccTTcEEEEEccTTcEEEEEEEEEEcccEEcGGGTcccc##########################################################################cTTcEEcTTccEEEEEcEEEEEEEcHHHHHHHHHTTTcEEccGGGGcHHHHHHHHHHHHHHTccEEEEEEcTTTcTT#TcEEEEEEEccccTTcccEETTcccccTTcTTccTTcccc#######cTTcccEE########EEEETTTT##EEEEEcccccEEEEEEEETTccc## DISOP:02AL 578-579| PSIPRED cccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccEEEEcccccccEEEEEEEEEccccccHHHHHHHHHccccEEEcccccccccccEEEEEEEEEccccccccccEEccEEEEEEcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEEccccccccEEEEEEEccccccccccccEEEEcccccccEEEEEcccccHHHHHHHHHHcccEEcccEEEcccEEEcccccEEEccHHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccEEEEEEEcccEEcccccEEEEcccccEEEEEEccccccccccEEEEEEEEEccccccccccccccccHHcccccccEEEccccccccEEEcccccEEEEEEEcccccHHHHHHHHHHHccEEEEEccHHHHHHHHHHHHccccccEEEEEEEEcHHHccccccccccccccccccEEEEEccEEccccccccccccccccccccEEEEEEccccccEEEccccccccccccccccccccccccccEEcccccEEEEcc //