[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Caenorhabditis elegans (nematode) (cele0)
Gene : Y54E2A.12
DDBJ      :             7 transmembrane receptor (rhodopsin family)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  130/199 : Viruses  0/175   --->[See Alignment]
a.69.2
:411 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   49->350 3dzxA PDBj 1e-12 14.7 %
:RPS:SCOP  44->206 1fkmA1  a.69.2.1 * 4e-04 23.5 %
:RPS:SCOP  237->353 1fkmA2  a.69.2.1 * 2e-07 15.5 %
:HMM:SCOP  51->255 1fkmA1 a.69.2.1 * 5.9e-17 23.7 %
:HMM:SCOP  233->355 1fkmA2 a.69.2.1 * 8.8e-11 20.8 %
:RPS:PFM   148->298 PF00566 * TBC 1e-06 28.3 %
:HMM:PFM   86->317 PF00566 * TBC 1.5e-29 24.3 210/214  
:BLT:SWISS 40->356 TBC20_MOUSE 4e-41 36.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID CAA21685.2 GT:GENE Y54E2A.12 GT:PRODUCT 7 transmembrane receptor (rhodopsin family) GT:ORG cele0 GT:DATABASE WS208 WP:CE CE37068 WP:PRODUCT 7 transmembrane receptor (rhodopsin family) WP:LOCUS WBGene00013196 GB:PROTEIN_ID CAA21685.2 LENGTH 411 SQ:AASEQ MHSSFSEPNSPLKEVLVDKWQTASCSDLGEEYVKPGPLARAKFNALRNKREAIDRFLKKHRKEDLSLYIDELRDFAISPGGLVDDEFRAVIWPVLSANLVQNDDLDDVSSSYDSDFESAQSDFDEEPAYEESEELTLEDLKGHKEWNQVELDVHRTLSRFPPNISDTHRDVLQTELIPLIVRVLSINPRFNYYQGFHDICLTVLLVCGEVDALPVCSNLAKNGSFNNYLLKTLEKSVVRELDLLYVILSRVDPSLEQVMRSVELGTMFGLSWPLTWFSHTLKQYQQIVRFFDVFLASSPLLPIYVSAAVVVFRRASILACEREMPFLHRLLTEMPHELPIDTIIKDSVYLSKLMPPCLLKTKYTNEYRKIVSKPSKAAVKTIPRYALQFMFVAGTVGAAASFFFFKQIHPM BL:SWS:NREP 1 BL:SWS:REP 40->356|TBC20_MOUSE|4e-41|36.7|283/402| TM:NTM 2 TM:REGION 291->312| TM:REGION 385->407| SEG 103->121|ddlddvsssydsdfesaqs| SEG 305->316|vsaavvvfrras| RP:PDB:NREP 1 RP:PDB:REP 49->350|3dzxA|1e-12|14.7|265/278| RP:PFM:NREP 1 RP:PFM:REP 148->298|PF00566|1e-06|28.3|145/204|TBC| HM:PFM:NREP 1 HM:PFM:REP 86->317|PF00566|1.5e-29|24.3|210/214|TBC| GO:PFM:NREP 3 GO:PFM GO:0005097|"GO:Rab GTPase activator activity"|PF00566|IPR000195| GO:PFM GO:0005622|"GO:intracellular"|PF00566|IPR000195| GO:PFM GO:0032313|"GO:regulation of Rab GTPase activity"|PF00566|IPR000195| RP:SCP:NREP 2 RP:SCP:REP 44->206|1fkmA1|4e-04|23.5|136/194|a.69.2.1| RP:SCP:REP 237->353|1fkmA2|2e-07|15.5|116/128|a.69.2.1| HM:SCP:REP 51->255|1fkmA1|5.9e-17|23.7|190/0|a.69.2.1|1/1|Ypt/Rab-GAP domain of gyp1p| HM:SCP:REP 233->355|1fkmA2|8.8e-11|20.8|120/188|a.69.2.1|1/1|Ypt/Rab-GAP domain of gyp1p| OP:NHOMO 154 OP:NHOMOORG 130 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----111-------1-1-11111111111111111111111111111-111111-111111111--1---1-1-------------11----1--1-------121-1--132222-111111111111261-2121111111111111111121112211112141211-1111--1------1----1---11111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 265 STR:RPRED 64.5 SQ:SECSTR ################################################HHHHHHHHHTccccc#####HHHHHHHHT###TcccGGGHHHHHHHHHTcccccc####################HHHHHHHHHHHHHHHccTTccHHHHH###HHHHHHHHHHHTcTTccccGGGHHHHHHHHHHHccccGGGccGGGccHH##HHHHHHHHHHHHHHHHHHT###TGGGccTTcHHHHHHHHHHHHHHHHHcHHHHHHHHHTTccTHHHHHHHHTTTGGG#ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHTHHHHHTcHHHHHHHHccccTTccHHHHHHHHHHHHHH############################################################# DISOP:02AL 1-9, 34-47, 107-123, 363-379| PSIPRED cccccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc //