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Caenorhabditis elegans (nematode) (cele0)
Gene : Y66H1B.3
DDBJ      :             nucleolar protein required for pre-rRNA splicing
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  151/199 : Viruses  0/175   --->[See Alignment]
a.40.1b.1.18d.258.1
:1084 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->252 2wa5A PDBj 3e-70 58.5 %
:BLT:PDB   545->633 2d7oA PDBj 4e-17 44.9 %
:BLT:PDB   737->1049 2j3sA PDBj 1e-26 34.5 %
:RPS:PDB   20->254 1dxxA PDBj 8e-46 33.2 %
:RPS:PDB   249->356 2e9iA PDBj 5e-04 13.8 %
:RPS:PDB   379->444 2e9jA PDBj 1e-06 24.2 %
:RPS:PDB   547->633 2bp3A PDBj 3e-22 42.5 %
:RPS:PDB   641->738 2eebA PDBj 2e-06 24.5 %
:RPS:PDB   719->833 2e9jA PDBj 6e-29 36.5 %
:RPS:PDB   838->917 2dlgA PDBj 6e-11 29.6 %
:RPS:PDB   896->1049 2di9A PDBj 4e-21 27.9 %
:RPS:SCOP  28->248 1pxyA  a.40.1.1 * 2e-43 22.5 %
:RPS:SCOP  382->447 2d7nA1  b.1.18.10 * 8e-07 27.3 %
:RPS:SCOP  546->800 1um0A  d.258.1.1 * 5e-22 11.8 %
:RPS:SCOP  852->922 2d7nA1  b.1.18.10 * 7e-11 19.2 %
:RPS:SCOP  984->1044 2d7nA1  b.1.18.10 * 2e-14 27.9 %
:HMM:SCOP  7->248 1rt8A_ a.40.1.1 * 3e-64 40.4 %
:HMM:SCOP  254->338 2dj4A1 b.1.18.10 * 6.1e-07 24.1 %
:HMM:SCOP  350->459 2dmbA1 b.1.18.10 * 4.8e-08 27.5 %
:HMM:SCOP  526->637 2di9A1 b.1.18.10 * 4.6e-23 35.7 %
:HMM:SCOP  638->734 2dj4A1 b.1.18.10 * 2.2e-12 28.1 %
:HMM:SCOP  715->819 2di9A1 b.1.18.10 * 7.9e-27 44.1 %
:HMM:SCOP  820->925 2dibA1 b.1.18.10 * 1.3e-16 34.9 %
:HMM:SCOP  936->1050 2di9A1 b.1.18.10 * 1.6e-25 37.4 %
:RPS:PFM   28->132 PF00307 * CH 1e-05 31.5 %
:RPS:PFM   153->219 PF00307 * CH 3e-06 43.9 %
:RPS:PFM   547->629 PF00630 * Filamin 1e-08 35.2 %
:RPS:PFM   657->728 PF00630 * Filamin 5e-04 34.2 %
:RPS:PFM   737->819 PF00630 * Filamin 1e-10 40.9 %
:RPS:PFM   861->914 PF00630 * Filamin 1e-04 36.4 %
:RPS:PFM   964->1042 PF00630 * Filamin 3e-12 45.6 %
:HMM:PFM   286->338 PF00630 * Filamin 0.00078 33.3 48/101  
:HMM:PFM   546->628 PF00630 * Filamin 4.2e-14 38.6 83/101  
:HMM:PFM   640->728 PF00630 * Filamin 2.6e-06 27.6 87/101  
:HMM:PFM   735->820 PF00630 * Filamin 6.6e-18 41.2 85/101  
:HMM:PFM   830->915 PF00630 * Filamin 2.6e-12 38.4 86/101  
:HMM:PFM   958->1042 PF00630 * Filamin 6.2e-18 34.1 85/101  
:HMM:PFM   28->131 PF00307 * CH 4.8e-20 29.0 100/109  
:HMM:PFM   152->248 PF00307 * CH 4.3e-19 32.6 95/109  
:BLT:SWISS 7->1043 FLNC_HUMAN e-144 38.1 %
:REPEAT 4|259->342|546->630|738->824|959->1044
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID AAC69000.1 GT:GENE Y66H1B.3 GT:PRODUCT nucleolar protein required for pre-rRNA splicing GT:ORG cele0 GT:DATABASE WS208 WP:CE CE20347 WP:PRODUCT nucleolar protein required for pre-rRNA splicing WP:LOCUS WBGene00022049 GB:PROTEIN_ID AAC69000.1 LENGTH 1084 SQ:AASEQ MAQPKRLDQEEEVVPAIRHDDAEWKIIQQNTFTRWVKNHLQKAGETIESLETDFSDGLKLIALAQVLSHKNVGKFNKKVAFRSQKLENVSLALNFFQNEENIKIINIDSTHIVDHNKKLILGLVWTLILHYSISMGWIQEKREDGDNKEETPKQKLLNWIRNRLPGMPISNFTSDWNDGVALGALVNSMAPGALEDWENWSPNDALENTEKAMKSAQDLLKVAPLIAPAEMIHPEIDEMSVMTYLSQFPATKPIIMKPKVQATISNLDKILQVNDPREFDLKLSRDGFKPKVSIRDEDGQDIHLSLKKVEDKENAYKVKFTPTKIGFIHVDVAANDVHTFETQTIPEASVICQVVPIARLLDYNKTAKVGDDVKFAVVDAIEGPVEAIVVDPTGKEHRMVILDGTSPGEHSFEYKIPCIGLHSVNVFHKKLPLTGSPFPLRGKPKNSFKVWGRGIAPEGIRKNDVVGVHVESLDPEENIANANISLEVLKPSDGSHLPVSVGYNDESQSMDFEYSPKQAPDDLEVLVKVAGEVIESHKIHVAPESSSKIRAFGAGLEGGIVNEPCVFDVEMNGESKDLSFAVEGPSKAEIGCQERPDGSAILSYTPTVAGVYKVGVLADGKHIQDSPFVLRVTEPIEGLKPSATRVTGIDESKVYNVGEKIPFRVDTRLCGVDLVPKVEILDPELNPISYGAREITPGLFEYTLIPDAPIKHKIDVSVAGVSVPGAPFSVKVKEPTDASKLKIFGPGVDGPVYSKEPTRFTIDATQAGPGAVEVALRDDQGENVDLDVLDNQDGSFTVKYTAQRPGAYQLNVVFAGEEISPIEINVKPNVDVSGIRVEGLENAVVTVNVEKEIHVFTTDGENTRIVITSPSGRVVEAIIESTPTGFRVRFTPSEVGNYTIDVTYQDIPIERSPFTLQSVEGPKNQDDSEILDGENQENPGDRTLAEAEYLVFGSGPPCADMVTVSGPGLGPLVAQRSTYVSIDTTNAGFGDIDVYVDGPTRTPLHCVDNQDGILKMSFTPKQPGLYYLRVMFDNEHVPGSPFQIVAVAALLGNPLDQRSKTESPYSSISSGSSSTPNPNPQACT BL:SWS:NREP 1 BL:SWS:REP 7->1043|FLNC_HUMAN|e-144|38.1|1013/2725| NREPEAT 1 REPEAT 4|259->342|546->630|738->824|959->1044| SEG 1063->1080|spyssissgssstpnpnp| BL:PDB:NREP 3 BL:PDB:REP 20->252|2wa5A|3e-70|58.5|224/237| BL:PDB:REP 545->633|2d7oA|4e-17|44.9|89/111| BL:PDB:REP 737->1049|2j3sA|1e-26|34.5|264/270| RP:PDB:NREP 8 RP:PDB:REP 20->254|1dxxA|8e-46|33.2|229/238| RP:PDB:REP 249->356|2e9iA|5e-04|13.8|98/106| RP:PDB:REP 379->444|2e9jA|1e-06|24.2|65/119| RP:PDB:REP 547->633|2bp3A|3e-22|42.5|87/91| RP:PDB:REP 641->738|2eebA|2e-06|24.5|95/106| RP:PDB:REP 719->833|2e9jA|6e-29|36.5|115/119| RP:PDB:REP 838->917|2dlgA|6e-11|29.6|80/102| RP:PDB:REP 896->1049|2di9A|4e-21|27.9|119/131| RP:PFM:NREP 7 RP:PFM:REP 28->132|PF00307|1e-05|31.5|101/106|CH| RP:PFM:REP 153->219|PF00307|3e-06|43.9|66/106|CH| RP:PFM:REP 547->629|PF00630|1e-08|35.2|83/95|Filamin| RP:PFM:REP 657->728|PF00630|5e-04|34.2|72/95|Filamin| RP:PFM:REP 737->819|PF00630|1e-10|40.9|82/95|Filamin| RP:PFM:REP 861->914|PF00630|1e-04|36.4|54/95|Filamin| RP:PFM:REP 964->1042|PF00630|3e-12|45.6|79/95|Filamin| HM:PFM:NREP 8 HM:PFM:REP 286->338|PF00630|0.00078|33.3|48/101|Filamin| HM:PFM:REP 546->628|PF00630|4.2e-14|38.6|83/101|Filamin| HM:PFM:REP 640->728|PF00630|2.6e-06|27.6|87/101|Filamin| HM:PFM:REP 735->820|PF00630|6.6e-18|41.2|85/101|Filamin| HM:PFM:REP 830->915|PF00630|2.6e-12|38.4|86/101|Filamin| HM:PFM:REP 958->1042|PF00630|6.2e-18|34.1|85/101|Filamin| HM:PFM:REP 28->131|PF00307|4.8e-20|29.0|100/109|CH| HM:PFM:REP 152->248|PF00307|4.3e-19|32.6|95/109|CH| RP:SCP:NREP 5 RP:SCP:REP 28->248|1pxyA|2e-43|22.5|209/465|a.40.1.1| RP:SCP:REP 382->447|2d7nA1|8e-07|27.3|65/80|b.1.18.10| RP:SCP:REP 546->800|1um0A|5e-22|11.8|228/365|d.258.1.1| RP:SCP:REP 852->922|2d7nA1|7e-11|19.2|71/80|b.1.18.10| RP:SCP:REP 984->1044|2d7nA1|2e-14|27.9|61/80|b.1.18.10| HM:SCP:REP 7->248|1rt8A_|3e-64|40.4|230/505|a.40.1.1|1/1|Calponin-homology domain, CH-domain| HM:SCP:REP 254->338|2dj4A1|6.1e-07|24.1|83/0|b.1.18.10|1/7|E set domains| HM:SCP:REP 350->459|2dmbA1|4.8e-08|27.5|109/0|b.1.18.10|2/7|E set domains| HM:SCP:REP 526->637|2di9A1|4.6e-23|35.7|112/0|b.1.18.10|3/7|E set domains| HM:SCP:REP 638->734|2dj4A1|2.2e-12|28.1|96/0|b.1.18.10|4/7|E set domains| HM:SCP:REP 715->819|2di9A1|7.9e-27|44.1|102/0|b.1.18.10|5/7|E set domains| HM:SCP:REP 820->925|2dibA1|1.3e-16|34.9|106/0|b.1.18.10|7/8|E set domains| HM:SCP:REP 936->1050|2di9A1|1.6e-25|37.4|115/0|b.1.18.10|7/7|E set domains| OP:NHOMO 1710 OP:NHOMOORG 151 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----985-----11211111111111111111111111111111111111111111111111111-------11---------1-111-121111111111-111-1534TUVOUSWFEDBGKFusBgD**X1sO*8GDBQEJMG8GDB9e89*FMDIG4CVNEIB7W79ZBOAB--------------1----1111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1026 STR:RPRED 94.6 SQ:SECSTR ###################cccccHHHHHHHHHHHHHHHHHHTTcccccTTTTTTTcHHHHHHHHHHHcccccGcccccccHHHHHHHHHHHHHHHHHHTTcccTTccHHHHHTTcHHHHHHHHHHHHHHHTTTHHHcHHHHHHHHHTTccHHHHHHHHHHHHHTTcccccccGGGTTcHHHHHHHHHHcGGGccHHHHHTcccHHHHHHHHHHHHHHTTcccccccHHHHccccccHHHHHHHHHHcccccccHTcccccccccccccEETccccEEEEEccccccTTTEEEEEcTTccccccEEEEccc##ccEEEEEcccccccEEEEEEEcccc######cTTccEEEcEEcHHHHHHHHTEEETTccEEEEETccccccEEccEEcTTcccccEEEEEcccccEEEEEEccccccEEEEccEEcccccTTccEEEEEEcccEEEEEccccEEEEEEEEEcccccccccccEEccccccEEEEEEcTTccEEccEEEEcccEEccccccccccccEEEEccccccccccccccccccccccccccEEEcGGGTEEETTccEEEEEEcTTccccEEEEEEcccccEEEEEEccccEEEEEEEccccEEEEEEEEETTEEcTTccEEEEEEcccccccccccccccGGGTEEEcTTccEEEEEEcTTcccccE#EEEEEcccccEEEEEEEEccccEEEEEEEccccEcccccccccccccccccccccccccccGGGEEEEcGGGcccEETTccEEEEEEEcccccccEEccEEcTTcccccEEEEEccccEEEEEEccccccEEEEccEEcccccccEEEEEEccccccccccccccEEETTccccEEEEEEcccTTcccccEEEEEcccEEcccEEccccEEEEEEccccEEEEEEEEETTEEEEEEEEEEEEEccccccTTTcEEEcccccTTTTccEEcccEEEEEcccccTTTcEEEEHHHHcccTTccEEEEEEcTTTccccEEEccccccccEEEEEEEETTEEEEEEEccccEEEEEcEEEcccccTTccEEEEEEcccEccT############################## DISOP:02AL 1-18, 134-155, 256-264, 836-842, 1052-1084| PSIPRED cccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccEEEcccccEEEEcccHHHHHHHHHHHHHcccccccccccHHHHccccccccHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHcccccccHHHcccccHHHHHHHHHHHHHHHcccccccccHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEcccccccccccHHccccccEEEEEcccccccEEEEEEcccccccEEEEEEEccccEEEEEEEcccccccccccEEcccccccccccccccccccEEEEccccEEEEEEccccEEEEEEEccccccccEEEEEEccccEEEEEEEEcccccEEEEEEEccEEcccccEEEEEEccccEEccccccccccEEEcccEEEEEEEcccccccccccEEEEEEcccccccEEEEEEEEccccEEEEEEEEcccccEEEEEEEEcccccccccEEEEEccccEEEEEccccccccccccEEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEEccccccccEEEEEcccccEEEEccccEEEEEEccccccccEEEEEEEccccccccEEEEEccccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEccccccEEEEEcccccccccccccEEEEEEcccccccEEEEEEEcccccEEEEEEEEccccEEEEEEEEcccccEEEEEEEccEEcccEEEEEEEcccccEEEEccccccccccccccEEEEEEEcccEEEEEEEcccccEEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEcccccccccccccccEEccccccccccccccEEEEcccccccEEEEccccccccccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEEcccccccccccEEEEccccccccEEccccccccccc //