[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Caenorhabditis elegans (nematode) (cele0)
Gene : ZK1240.1
DDBJ      :             homology with E.coli lepA protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  57/199 : Viruses  0/175   --->[See Alignment]
g.43.1g.44.1
:310 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->71 2ct2A PDBj 4e-11 39.7 %
:RPS:PDB   6->75 2cklB PDBj 9e-08 22.2 %
:RPS:PDB   90->139 2didA PDBj 4e-07 22.7 %
:RPS:SCOP  6->74 1rmdA2  g.44.1.1 * 3e-09 21.9 %
:RPS:SCOP  91->135 2didA1  g.43.1.1 * 3e-06 25.6 %
:HMM:SCOP  2->58 1g25A_ g.44.1.1 * 1.3e-10 32.1 %
:HMM:PFM   7->51 PF00097 * zf-C3HC4 1.9e-07 39.0 41/42  
:HMM:PFM   90->131 PF00643 * zf-B_box 6.3e-05 30.6 36/42  
:BLT:SWISS 3->206 ARD1_MOUSE 6e-21 37.3 %
:PROS 28->37|PS00518|ZF_RING_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD WormBase Abbreviations Back to title page
GT:ID AAB66140.3 GT:GENE ZK1240.1 GT:PRODUCT homology with E.coli lepA protein GT:ORG cele0 GT:DATABASE WS208 WP:CE CE33494 WP:PRODUCT homology with E.coli lepA protein WP:LOCUS WBGene00022866 GB:PROTEIN_ID AAB66140.3 LENGTH 310 SQ:AASEQ MSKVIECEICNLEFSSVNEDQVPRILKCGHSVCQCCATKLLKNSAISCPFCRETTSVSAVKDLQKNFALLQIIEHTKTERVEEEDEADVPPKCATHKYNMAEFVCLDPNCSSDEKLMCRTCEEFGVHAGHSKGLLQTEALKLRTLLKDKLLKSEDQIVQIDKNIEEVDSAQQTNQVDGKVFQDKKDLISVYYTSIRETLDAQEALANQKLREIAESNSASNKLLLEELSESLETQKLKNEKLKSFLGMSNADLLALNSEIQLWDDSENTEVEPIQFDVALNFPEVNRLAVDVANASMSSSLEPDNITLWL BL:SWS:NREP 1 BL:SWS:REP 3->206|ARD1_MOUSE|6e-21|37.3|201/574| PROS 28->37|PS00518|ZF_RING_1|PDOC00449| SEG 140->152|lklrtllkdkllk| SEG 214->233|aesnsasnkllleelsesle| BL:PDB:NREP 1 BL:PDB:REP 1->71|2ct2A|4e-11|39.7|68/88| RP:PDB:NREP 2 RP:PDB:REP 6->75|2cklB|9e-08|22.2|63/96| RP:PDB:REP 90->139|2didA|4e-07|22.7|44/53| HM:PFM:NREP 2 HM:PFM:REP 7->51|PF00097|1.9e-07|39.0|41/42|zf-C3HC4| HM:PFM:REP 90->131|PF00643|6.3e-05|30.6|36/42|zf-B_box| RP:SCP:NREP 2 RP:SCP:REP 6->74|1rmdA2|3e-09|21.9|64/86|g.44.1.1| RP:SCP:REP 91->135|2didA1|3e-06|25.6|39/40|g.43.1.1| HM:SCP:REP 2->58|1g25A_|1.3e-10|32.1|56/65|g.44.1.1|1/1|RING/U-box| OP:NHOMO 220 OP:NHOMOORG 57 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------33422132-32342G7381FE7163824113144433113411334453112-1-2----11N2------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 139 STR:RPRED 44.8 SQ:SECSTR cccccccTTTccccEccccccEEEETTTccEEEHHHHHHHHHTTccccTTTccEcccccGGGEEEcHHHHHHHHHHHHTTcccccccccccccTTTcccccEEEETTEEEcccccEEcHHHHTccTTTTccEEEcccTT########################################################################################################################################################################### DISOP:02AL 213-217, 221-245, 264-271| PSIPRED ccccEEccHHHHHHcccccccccEEEccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHccccccccccccccccccccccccEEEcccEEEEEEccccccccc //