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Halobacterium sp. NRC-1 (halo0)
Gene : cdc48c
DDBJ      :cdc48c       cell division cycle protein
Swiss-Prot:CDCH_HALSA   RecName: Full=Protein cdcH;

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  198/199 : Viruses  2/175   --->[See Alignment]
b.52.2c.37.1d.31.1
:742 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   141->716 1yq0A PDBj e-171 51.4 %
:RPS:PDB   5->184 1cz4A PDBj 2e-19 33.1 %
:RPS:PDB   173->718 3cmuA PDBj 1e-93 11.9 %
:RPS:SCOP  1->87 1cz4A1  b.52.2.3 * 1e-23 37.9 %
:RPS:SCOP  89->184 1cz4A2  d.31.1.1 * 5e-14 28.6 %
:RPS:SCOP  186->455 1oz4A2  c.37.1.20 * 4e-51 57.4 %
:RPS:SCOP  459->713 1oz4A2  c.37.1.20 * 2e-42 45.8 %
:HMM:SCOP  2->88 1cz4A1 b.52.2.3 * 6.3e-26 48.3 %
:HMM:SCOP  89->191 1cz4A2 d.31.1.1 * 5.9e-20 47.3 %
:HMM:SCOP  186->443 1e32A2 c.37.1.20 * 2.3e-68 37.2 %
:HMM:SCOP  456->723 1oz4A3 c.37.1.20 * 2.1e-73 39.2 %
:RPS:PFM   15->88 PF02359 * CDC48_N 3e-07 39.2 %
:RPS:PFM   108->178 PF02933 * CDC48_2 6e-09 51.6 %
:RPS:PFM   226->350 PF00004 * AAA 1e-33 57.6 %
:RPS:PFM   499->626 PF00004 * AAA 3e-32 51.6 %
:HMM:PFM   226->355 PF00004 * AAA 2.1e-50 60.2 128/130  
:HMM:PFM   499->629 PF00004 * AAA 2.1e-49 60.9 128/130  
:HMM:PFM   5->88 PF02359 * CDC48_N 5.3e-31 47.6 84/87  
:HMM:PFM   106->176 PF02933 * CDC48_2 3.8e-16 44.3 61/64  
:BLT:SWISS 1->742 CDCH_HALSA 0.0 100.0 %
:PROS 326->344|PS00674|AAA
:PROS 600->618|PS00674|AAA
:REPEAT 2|186->458|459->717

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAG19919.1 GT:GENE cdc48c GT:PRODUCT cell division cycle protein GT:DATABASE GIB00041CH01 GT:ORG halo0 GB:ACCESSION GIB00041CH01 GB:LOCATION 1242669..1244897 GB:FROM 1242669 GB:TO 1244897 GB:DIRECTION + GB:GENE cdc48c GB:PRODUCT cell division cycle protein GB:NOTE Cdc48c GB:PROTEIN_ID AAG19919.1 GB:DB_XREF GI:10581137 GB:GENE:GENE cdc48c LENGTH 742 SQ:AASEQ MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWNTDTIRIDGFTRQNAEVGIGERVKIRKADAEKADTLVLAPPEEASVQFGSDAAGMVKRQILKRPVVARDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLVTEDTDVELREEPISGFERTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAAMRALRRYLPEIDLDEEDIPPSLIDRMIVKREDFKGALSEVEPSAMREVLVELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGLEEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAAIEALRDDEDADDVGMAHFRAAMENVRPTITDDLMEYYDQVEDQFKGSQGPNVNSRQGSEHIGFQ GT:EXON 1|1-742:0| SW:ID CDCH_HALSA SW:DE RecName: Full=Protein cdcH; SW:GN Name=cdcH; Synonyms=cdc48c; OrderedLocusNames=VNG_1667G; SW:KW ATP-binding; Complete proteome; Nucleotide-binding; Repeat. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->742|CDCH_HALSA|0.0|100.0|742/742| GO:SWS:NREP 2 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| PROS 326->344|PS00674|AAA|PDOC00572| PROS 600->618|PS00674|AAA|PDOC00572| NREPEAT 1 REPEAT 2|186->458|459->717| BL:PDB:NREP 1 BL:PDB:REP 141->716|1yq0A|e-171|51.4|562/698| RP:PDB:NREP 2 RP:PDB:REP 5->184|1cz4A|2e-19|33.1|175/185| RP:PDB:REP 173->718|3cmuA|1e-93|11.9|546/1937| RP:PFM:NREP 4 RP:PFM:REP 15->88|PF02359|3e-07|39.2|74/87|CDC48_N| RP:PFM:REP 108->178|PF02933|6e-09|51.6|62/66|CDC48_2| RP:PFM:REP 226->350|PF00004|1e-33|57.6|118/123|AAA| RP:PFM:REP 499->626|PF00004|3e-32|51.6|120/123|AAA| HM:PFM:NREP 4 HM:PFM:REP 226->355|PF00004|2.1e-50|60.2|128/130|AAA| HM:PFM:REP 499->629|PF00004|2.1e-49|60.9|128/130|AAA| HM:PFM:REP 5->88|PF02359|5.3e-31|47.6|84/87|CDC48_N| HM:PFM:REP 106->176|PF02933|3.8e-16|44.3|61/64|CDC48_2| GO:PFM:NREP 4 GO:PFM GO:0005524|"GO:ATP binding"|PF02359|IPR003338| GO:PFM GO:0005524|"GO:ATP binding"|PF02933|IPR004201| GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| RP:SCP:NREP 4 RP:SCP:REP 1->87|1cz4A1|1e-23|37.9|87/91|b.52.2.3| RP:SCP:REP 89->184|1cz4A2|5e-14|28.6|91/94|d.31.1.1| RP:SCP:REP 186->455|1oz4A2|4e-51|57.4|270/270|c.37.1.20| RP:SCP:REP 459->713|1oz4A2|2e-42|45.8|254/270|c.37.1.20| HM:SCP:REP 2->88|1cz4A1|6.3e-26|48.3|87/0|b.52.2.3|1/1|ADC-like| HM:SCP:REP 89->191|1cz4A2|5.9e-20|47.3|91/94|d.31.1.1|1/1|Cdc48 domain 2-like| HM:SCP:REP 186->443|1e32A2|2.3e-68|37.2|258/258|c.37.1.20|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 456->723|1oz4A3|2.1e-73|39.2|268/293|c.37.1.20|2/2|P-loop containing nucleoside triphosphate hydrolases|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fMOPMLKJKLJHIRVXBR*ZkhmdiemQOPLRURfgKvP**b1dYuLMKKaMRYONQOQLTPOcOcTVWRgWTUSYNfSUwVaVQPZca*WVWZa*u**M*yZcXZUZj -----------------------------------------------------------------------------------------------1--------------------------------------------------------------------------1---- DISOP:02AL 168-186, 294-311, 573-578, 718-742| PSIPRED ccccEEEEEccccccccccEEEEcHHHHHHcccccccEEEEEccccEEEEEEEcccccccccEEEEcHHHHcccccccccEEEEEEcccHHHHHHHccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccccEEccccHHHHHHHHcccccccccccccHHHHccHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHcccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccHHHccHHHHccccccEEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccEEEEEcHHHHHHHccHHHHHHHHHHHHHHHccccEEEcccHHHHHHccccccccHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccc //