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Halobacterium sp. NRC-1 (halo0)
Gene : rad2
DDBJ      :rad2         DNA repair protein
Swiss-Prot:FEN_HALSA    RecName: Full=Flap structure-specific endonuclease;         EC=3.1.-.-;

Homologs  Archaea  66/68 : Bacteria  0/915 : Eukaryota  181/199 : Viruses  1/175   --->[See Alignment]
a.60.7c.120.1
:327 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->314 1rxvA PDBj 2e-38 38.2 %
:RPS:PDB   5->326 1b43A PDBj 5e-53 31.9 %
:RPS:SCOP  5->208 1a76A2  c.120.1.2 * 1e-29 29.7 %
:RPS:SCOP  211->320 1a76A1  a.60.7.1 * 5e-25 30.5 %
:HMM:SCOP  6->226 1mc8A2 c.120.1.2 * 2.3e-51 40.5 %
:HMM:SCOP  211->329 1b43A1 a.60.7.1 * 6.8e-21 35.3 %
:RPS:PFM   13->94 PF00752 * XPG_N 6e-07 36.8 %
:RPS:PFM   143->226 PF00867 * XPG_I 6e-12 45.8 %
:HMM:PFM   143->226 PF00867 * XPG_I 1.4e-22 43.4 83/92  
:HMM:PFM   6->101 PF00752 * XPG_N 1.2e-13 33.3 90/101  
:HMM:PFM   212->256 PF01367 * 5_3_exonuc 0.00039 37.8 45/101  
:HMM:PFM   90->130 PF03449 * GreA_GreB_N 0.001 24.4 41/74  
:BLT:SWISS 1->327 FEN_HALSA e-173 100.0 %
:PROS 75->89|PS00841|XPG_1
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAG19690.1 GT:GENE rad2 GT:PRODUCT DNA repair protein GT:DATABASE GIB00041CH01 GT:ORG halo0 GB:ACCESSION GIB00041CH01 GB:LOCATION complement(1013308..1014291) GB:FROM 1013308 GB:TO 1014291 GB:DIRECTION - GB:GENE rad2 GB:PRODUCT DNA repair protein GB:NOTE Rad2 GB:PROTEIN_ID AAG19690.1 GB:DB_XREF GI:10580870 GB:GENE:GENE rad2 LENGTH 327 SQ:AASEQ MGNADLRQLAAIEETPFADLEGSVVAVDAHNWLYKYLTTTVQWTGADVYTTSDGTEVANLVGAVQGLPKFFEHGLTPVFVWDGGVTELKDDEIADRREQRERYEEQLDDAREAGDAAEAARLDARTQRLTPTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLLGSPVTLRQLTSSGHPELMDFDATLAEHDLTWEQLVDVGILCGTDFNPGIDGFGPTTALDAIGEHGDLWDVLAAEGEHVAHGDRIRELFLNPDVTDDYVIDPDVSPAIDAARAFVTDEWEVDADAVARGFERIDAAAAQTGLDRWT GT:EXON 1|1-327:0| SW:ID FEN_HALSA SW:DE RecName: Full=Flap structure-specific endonuclease; EC=3.1.-.-; SW:GN Name=fen; OrderedLocusNames=VNG_1359G; SW:KW Complete proteome; Endonuclease; Hydrolase; Magnesium; Metal-binding;Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->327|FEN_HALSA|e-173|100.0|327/327| GO:SWS:NREP 4 GO:SWS GO:0004519|"GO:endonuclease activity"|Endonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| PROS 75->89|PS00841|XPG_1|PDOC00658| COIL:NAA 38 COIL:NSEG 1 COIL:REGION 90->127| SEG 96->125|rreqreryeeqlddareagdaaeaarldar| BL:PDB:NREP 1 BL:PDB:REP 5->314|1rxvA|2e-38|38.2|301/305| RP:PDB:NREP 1 RP:PDB:REP 5->326|1b43A|5e-53|31.9|317/339| RP:PFM:NREP 2 RP:PFM:REP 13->94|PF00752|6e-07|36.8|76/99|XPG_N| RP:PFM:REP 143->226|PF00867|6e-12|45.8|83/88|XPG_I| HM:PFM:NREP 4 HM:PFM:REP 143->226|PF00867|1.4e-22|43.4|83/92|XPG_I| HM:PFM:REP 6->101|PF00752|1.2e-13|33.3|90/101|XPG_N| HM:PFM:REP 212->256|PF01367|0.00039|37.8|45/101|5_3_exonuc| HM:PFM:REP 90->130|PF03449|0.001|24.4|41/74|GreA_GreB_N| GO:PFM:NREP 4 GO:PFM GO:0004518|"GO:nuclease activity"|PF00752|IPR006085| GO:PFM GO:0006281|"GO:DNA repair"|PF00752|IPR006085| GO:PFM GO:0004518|"GO:nuclease activity"|PF00867|IPR006086| GO:PFM GO:0006281|"GO:DNA repair"|PF00867|IPR006086| RP:SCP:NREP 2 RP:SCP:REP 5->208|1a76A2|1e-29|29.7|202/207|c.120.1.2| RP:SCP:REP 211->320|1a76A1|5e-25|30.5|105/108|a.60.7.1| HM:SCP:REP 6->226|1mc8A2|2.3e-51|40.5|215/219|c.120.1.2|1/1|PIN domain-like| HM:SCP:REP 211->329|1b43A1|6.8e-21|35.3|116/0|a.60.7.1|1/1|5' to 3' exonuclease, C-terminal subdomain| OP:NHOMO 311 OP:NHOMOORG 248 OP:PATTERN 11111111-1-111112111111111111111111111111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1122111-3111111222111111111111111111111-111111111111111111111113211-22223121111112221111-2212112111111132-11-1354212-1111-1121111131-111-1-1-1112-11--1-11111-1111121-1111111111112B1111122412111111111 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-- STR:NPRED 323 STR:RPRED 98.8 SQ:SECSTR ###cccGGGcccEEccGGGGTTcEEEEEHHHHHHHHHHHcccTTcccccccTTccccHHHHHHHHHHHHHHHTTcEEEEEEccccccccccccTTccccTTHHHHHHHHHHHHccHHHHHHHHHTcGGGTHHHHHHHHHHHHHHTccEEEccccHHHHHHHHHHHTccccEEEccccHHHHTTccEEEEcTTTcEccEEEEHHHHHHHHTccHHHHHHHHHHHccTTcTccTTccHHHHHHHHHTcccGGGGTGGGccHcccHHHHHHHHHcccccccccccccccccHHHHHHHHTTTTcccHHHHHHHHHHHHHHTTGGGcccc# DISOP:02AL 118-120, 321-327| PSIPRED ccccccHHccccccccHHHHcccEEEEEHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHccEEEEEEcccEEEEEEcccEEEEccccccccccccHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccc //