[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Halorubrum lacusprofundi ATCC 49239 (hlac0)
Chromosome : 1
Gene : ACM56274.1
DDBJ      :             peptidase M20
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  7/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.56.5d.58.19
:407 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   8->270 1vgyA PDBj 2e-05 26.5 %
:RPS:PDB   9->302 3ct9A PDBj 5e-18 20.9 %
:RPS:SCOP  9->186 1cg2A1  c.56.5.4 * 4e-14 27.8 %
:RPS:SCOP  228->279 1ysjA2  d.58.19.1 * 6e-06 15.4 %
:HMM:SCOP  7->396 1lfwA1 c.56.5.4 * 7.9e-31 34.1 %
:HMM:PFM   66->391 PF01546 * Peptidase_M20 1.2e-24 37.2 156/171  
:BLT:SWISS 16->278 LYSK_PYRAE 9e-20 32.6 %
:PROS 108->142|PS00759|ARGE_DAPE_CPG2_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACM56274.1 GT:GENE ACM56274.1 GT:PRODUCT peptidase M20 GT:DATABASE GIB00862CH01 GT:ORG hlac0 GB:ACCESSION GIB00862CH01 GB:CHROMOSOME 1 GB:LOCATION 688638..689861 GB:FROM 688638 GB:TO 689861 GB:DIRECTION + GB:PRODUCT peptidase M20 GB:NOTE PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: hma:rrnAC0196 succinyl-diaminopimelate desuccinylase GB:PROTEIN_ID ACM56274.1 GB:DB_XREF GI:222452009 InterPro:IPR001261 InterPro:IPR002933 InterPro:IPR011650 LENGTH 407 SQ:AASEQ MSGAAFDSVSFLEQAVQTPSHESVDEMREFVVETLDQFGAESEVVAGGCVLAKKYSDAPGEGPHLVLNTHLDTVTPHVPFERGEAHEDERADSVSDDGPGDVIRGRGACDAKGPLAALLSGFLAADPERGRITLALTPDEESLSLGAAALTGRSPGTEDRLNGDLFLVGEPTSLDACTAAKGRFQGTVELSGTAAHAAEFAGANAVAAAEGALAAIRTFDDGADEHPQLGPPKLTPTVIEGGGATNQVPADCEITADRRSVPPETAEGFRSSLADAVRESTPKDIGVAVALTDRESPFFEAFSTDPDHELVGAVANAARIAADSTGILADRGGAVRPFGAATEASYFAPAPTVVFGPGDLADNAGAVAHAEREYVRVREVEAAAKTVERSIAALLGDAGATAADDAV GT:EXON 1|1-407:0| BL:SWS:NREP 1 BL:SWS:REP 16->278|LYSK_PYRAE|9e-20|32.6|233/341| PROS 108->142|PS00759|ARGE_DAPE_CPG2_2|PDOC00613| SEG 194->215|aahaaefaganavaaaegalaa| SEG 313->322|avanaariaa| SEG 366->389|avahaereyvrvreveaaaktver| SEG 392->406|aallgdagataadda| BL:PDB:NREP 1 BL:PDB:REP 8->270|1vgyA|2e-05|26.5|249/370| RP:PDB:NREP 1 RP:PDB:REP 9->302|3ct9A|5e-18|20.9|263/337| HM:PFM:NREP 1 HM:PFM:REP 66->391|PF01546|1.2e-24|37.2|156/171|Peptidase_M20| RP:SCP:NREP 2 RP:SCP:REP 9->186|1cg2A1|4e-14|27.8|162/276|c.56.5.4| RP:SCP:REP 228->279|1ysjA2|6e-06|15.4|52/96|d.58.19.1| HM:SCP:REP 7->396|1lfwA1|7.9e-31|34.1|229/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 23 OP:NHOMOORG 23 OP:PATTERN -----------------111111-1--1111------------------------1--1--------- 1-----------------------------------------------------1-----------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------11----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------111------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 356 STR:RPRED 87.5 SQ:SECSTR ###HTcHHHHHHHHHHTcccccHHHHHHHHHHHHHHHTTcEEEEEETTEEEEEccccTTccccEEEEEEEcccccccccccccEEETTccccTTccEEcccEEEcTTTTTTHHHHHHHHHHHHHHTTcccEEEEEEEccGGGTcTTTHHHHHHHTHGGGcccccEEEEccccTccEEEEEEcccEEEEEEEcccccTTccccccTTGGGHHHHHHHHHcccccccccTTTcccEEEEEEEEcccTTccccEEEEEEEEEccTTccHHHHHHHHHHHcccEEEEccccccEEccTTcHHHHHHHHTcHHHHHcHHHHHHHHHHHTTcccEEcccEEccccEEEccccGGGGEEEEccccc################################################ PSIPRED cccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEEccccEEEEEEccccccccEEEEEcccccccccccccccccccccccccEEEcccccEEEEccccccHHHHHHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHcccccccccEEEEcccccccEEEEEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccccccEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHcccccccccccccccEEcccHHHHHccccEEEEcccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccccccc //