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Halorubrum lacusprofundi ATCC 49239 (hlac0)
Chromosome : 1
Gene : ACM56580.1
DDBJ      :             protein of unknown function DUF839
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  66/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:626 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   396->452 1bo6A PDBj 3e-04 31.6 %
:BLT:PDB   496->569 1z1nX PDBj 5e-04 29.7 %
:RPS:SCOP  504->606 1yvuA2  c.55.3.10 * 8e-05 12.1 %
:RPS:PFM   198->250 PF10564 * MAR_sialic_bdg 1e-04 37.7 %
:RPS:PFM   223->393 PF05787 * DUF839 9e-12 43.3 %
:HMM:PFM   40->77 PF05787 * DUF839 6.9e-05 34.2 38/524  
:HMM:PFM   222->614 PF05787 * DUF839 9.5e-35 29.5 288/524  
:HMM:PFM   4->29 PF10518 * TAT_signal 8.8e-05 34.6 26/26  
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACM56580.1 GT:GENE ACM56580.1 GT:PRODUCT protein of unknown function DUF839 GT:DATABASE GIB00862CH01 GT:ORG hlac0 GB:ACCESSION GIB00862CH01 GB:CHROMOSOME 1 GB:LOCATION complement(975003..976883) GB:FROM 975003 GB:TO 976883 GB:DIRECTION - GB:PRODUCT protein of unknown function DUF839 GB:NOTE PFAM: protein of unknown function DUF839; KEGG: sde:Sde_0385 putative cell surface protein GB:PROTEIN_ID ACM56580.1 GB:DB_XREF GI:222452315 InterPro:IPR008557 LENGTH 626 SQ:AASEQ MPNNYTRRTVVSSLAALAAASQTAGSVAGKEAEGQGHGIEQEGATLNRFATTIIGAEITGMFITEDGRFFFNVQHPDANLDGEDEPGILGAVTGVDMNQLPRDFQSVQIPEGDDDDYSDDGDGVPEPYDQRVRTALGDYQRLATGGDETDDGEELGSVYTPEGDSLTGQINPDFNGYVPSSEEPDEGYLFTNWEHRPGAMTRVHLQQNGRNGTWRVLGMENLDFSAVEGTWVNCFGTVSPWGTPLTSEENYSIPDTPVWNNPDWQYKGGVERLARHLGHERNDDGIFADKFPNPYRYGYIVELKEPESEEPIPEKRFALGRSTHENAVVMPDEKTAYTTSDGTARGFYKFVADEKGDLSSGTLYAAKATQKGPLGGDPDKVSFGIEWIELGHASDEEIEKWIAEYDDITQADYEDGENSYISEGEMDEWAAGDADDDRVAFLQCRQAAMRKGATTEFRKMEGINIRRGAEAGEDYMYVAMSNTNRTMGDDEGDIQLNGDEWGAVYRMPLESDYDISEMEPIVTGGPEANICGGCPYDANPNANDKACQSCAFNPTKDDEDQGRLKGTMNLAKSMAMSGQTSLDVENTIAEPDNIVVMDDGRVVIGEDTGNRGHENNMIWVFDPGSA GT:EXON 1|1-626:0| SEG 9->29|tvvsslaalaaasqtagsvag| SEG 112->123|gddddysddgdg| SEG 144->154|tggdetddgee| SEG 302->314|elkepeseepipe| BL:PDB:NREP 2 BL:PDB:REP 396->452|1bo6A|3e-04|31.6|57/282| BL:PDB:REP 496->569|1z1nX|5e-04|29.7|74/516| RP:PFM:NREP 2 RP:PFM:REP 198->250|PF10564|1e-04|37.7|53/98|MAR_sialic_bdg| RP:PFM:REP 223->393|PF05787|9e-12|43.3|157/489|DUF839| HM:PFM:NREP 3 HM:PFM:REP 40->77|PF05787|6.9e-05|34.2|38/524|DUF839| HM:PFM:REP 222->614|PF05787|9.5e-35|29.5|288/524|DUF839| HM:PFM:REP 4->29|PF10518|8.8e-05|34.6|26/26|TAT_signal| RP:SCP:NREP 1 RP:SCP:REP 504->606|1yvuA2|8e-05|12.1|91/377|c.55.3.10| OP:NHOMO 78 OP:NHOMOORG 75 OP:PATTERN ------------------------2--1--1------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------11--11111111111111-1111111111111------12--1--1--11--------------------------------------------------------1-------------------------1-1--1----------------------------------------------------------------------------------------------------------------------------------11--2---------------1111111--1--------1-------111---------1-11-------------11111111--------------------------------------------------------------- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------11-1---11-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 131 STR:RPRED 20.9 SQ:SECSTR ###########################################################################################################################################################################################################################################################################################################################################################################################################HHHHTccccTTcEEEEEcTTccHHHHHHHHHHHHTTcccHHHHcccTTcEETTTEEH###########################################ccccccccEHHHHHHHHHHHHTTcHHHHHccTTTGGGGTccccccccccccHHHHHTccGGGcTTcccHHHHHH######################################################### PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEcccccEEEEEcccccccccccccccccEEEEccHHHcccccEEEEEEcccccccHHccccccccccEEEEEccccEEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEccccccEEEEEEEcccccccccccEEEEEccccccccccccccHHHHccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEEccccccEEEEEcccccEEEEEEcccccEEEEEccccccccccccEEEEEEEcccccccccccccccEEEEEcccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccccccccccccccccccEEEEEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEccccccccccEEEEEEcccc //