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Halorubrum lacusprofundi ATCC 49239 (hlac0)
Chromosome : 1
Gene : ACM56606.1
DDBJ      :             translation initiation factor 2, alpha subunit
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  183/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
a.60.14b.40.4d.58.51
:266 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   6->237 1yz6A PDBj 6e-35 37.0 %
:RPS:PDB   7->257 2ahoB PDBj 4e-19 22.8 %
:RPS:SCOP  7->81 2ahoB2  b.40.4.5 * 5e-17 35.7 %
:RPS:SCOP  83->143 2ahoB1  a.60.14.1 * 3e-07 23.0 %
:RPS:SCOP  173->237 2ahoB3  d.58.51.1 * 2e-14 24.6 %
:HMM:SCOP  7->99 1go3E1 b.40.4.5 * 3.9e-21 33.3 %
:HMM:SCOP  83->171 2ahoB1 a.60.14.1 * 1.2e-21 38.6 %
:HMM:SCOP  172->258 2ahoB3 d.58.51.1 * 1.6e-22 39.1 %
:RPS:PFM   10->79 PF00575 * S1 4e-07 38.2 %
:HMM:PFM   117->230 PF07541 * EIF_2_alpha 1.1e-29 26.8 112/114  
:HMM:PFM   7->81 PF00575 * S1 2.9e-17 39.7 73/74  
:BLT:SWISS 1->266 IF2A_HALMA e-105 69.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACM56606.1 GT:GENE ACM56606.1 GT:PRODUCT translation initiation factor 2, alpha subunit GT:DATABASE GIB00862CH01 GT:ORG hlac0 GB:ACCESSION GIB00862CH01 GB:CHROMOSOME 1 GB:LOCATION complement(1004734..1005534) GB:FROM 1004734 GB:TO 1005534 GB:DIRECTION - GB:PRODUCT translation initiation factor 2, alpha subunit GB:NOTE PFAM: RNA binding S1 domain protein; translation initiation factor 2, alpha subunit; KEGG: hma:rrnAC3512 translation initiation factor IF-2 subunit alpha GB:PROTEIN_ID ACM56606.1 GB:DB_XREF GI:222452341 InterPro:IPR003029 InterPro:IPR011488 LENGTH 266 SQ:AASEQ MKYSGWPEPGELVVGDVDEIADFGVFVDLDEYEDKRGLCHISEVASGWIKNVRDHVREGQTVVAKVLDVDESANQIDLSIKDVNEHQRKDKIQDWKNSQKADNWMLIALGEDVDDDRYTAVANALLVEFDSLYDAFEAAAISGEEALEEIDIDDDALDAIVTAARDNVSVPYVDVTGYVDLESTAPNGVDDVKAALEAAEGNGEVPDGVDLEVGYVGSPEYRIKVRAPNYKTAEDQLEAAAARAREAIEAAGGSGGFHRDRHEDDE GT:EXON 1|1-266:0| BL:SWS:NREP 1 BL:SWS:REP 1->266|IF2A_HALMA|e-105|69.5|266/266| SEG 144->160|eealeeididddaldai| SEG 238->251|eaaaarareaieaa| BL:PDB:NREP 1 BL:PDB:REP 6->237|1yz6A|6e-35|37.0|230/261| RP:PDB:NREP 1 RP:PDB:REP 7->257|2ahoB|4e-19|22.8|246/259| RP:PFM:NREP 1 RP:PFM:REP 10->79|PF00575|4e-07|38.2|68/74|S1| HM:PFM:NREP 2 HM:PFM:REP 117->230|PF07541|1.1e-29|26.8|112/114|EIF_2_alpha| HM:PFM:REP 7->81|PF00575|2.9e-17|39.7|73/74|S1| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 3 RP:SCP:REP 7->81|2ahoB2|5e-17|35.7|70/79|b.40.4.5| RP:SCP:REP 83->143|2ahoB1|3e-07|23.0|61/91|a.60.14.1| RP:SCP:REP 173->237|2ahoB3|2e-14|24.6|65/89|d.58.51.1| HM:SCP:REP 7->99|1go3E1|3.9e-21|33.3|90/0|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 83->171|2ahoB1|1.2e-21|38.6|88/0|a.60.14.1|1/1|eIF2alpha middle domain-like| HM:SCP:REP 172->258|2ahoB3|1.6e-22|39.1|87/0|d.58.51.1|1/1|eIF-2-alpha, C-terminal domain| OP:NHOMO 307 OP:NHOMOORG 265 OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111111 11---------------------------------------------------------------------1111111-------------------------------------------------------------11---1---------------------------------------11-----11222222222222222211222222221211211111111--11111111111111-11111-1-----2-1--------1---111-----------------------------------11---111-1--1311111113122-221111-22-1----------1----221-1----1------------------1-----------------------------------------1--------------------------------------------------------------------------------------------111---------------------------------------1-1----1---11---------1---1----1-------------------------------1---111------------------------1--------------------------------------------------------------------------------------------1------------111-------------------------1-11111111-11111-11111111111----1------------111111111111------1111-------------------------------------------111--1 ---------------11-------1---------------------------------11-----------2---------11----1----1----------1----------------------------------------------------------------------------1----1--2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 254 STR:RPRED 95.5 SQ:SECSTR #####EccTTcccEEEEEEEETTEEEEEETTTTTEEEEEcGGGccccccccHHHHTccccEEEcEEEEEETTTTEEEEEcccccTTHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHTTHHTTTTccHHHHHHHHHHccTHHHHTTTccTTTHHHHHHHHHHHHHHTcEEEEEEEEEEcccTTHHHHHHHHHHHHcccTTccccccEEEEEccccEEEEEEEEccGGGHHHHHHHHHHHHHHHHTTTTcEEEEcc####### PSIPRED cccccccccccEEEEEEEEEEccEEEEEEccccccEEEEEEEEccccccccHHHEEccccEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHcHHHHccHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHcccccEEEEEEEEEEEccccHHHHHHHHHHHHHHccccccccEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccc //