Halorubrum lacusprofundi ATCC 49239 (hlac0)
Chromosome : 1
Gene : ACM57198.1
DDBJ : XPG I domain protein
Swiss-Prot:
Homologs Archaea 66/68 : Bacteria 0/915 : Eukaryota 195/199 : Viruses 2/175 --->[See Alignment]
a.60.7
c.120.1












:325 amino acids










































:SECSTR


















































:PSIPRED

:DISOPRED


:BLT:PDB 5->312 1rxvA PDBj 5e-45 36.5 %


:RPS:PDB 5->324 1b43A PDBj 1e-52 32.8 %


:RPS:SCOP 5->208 1a76A2 c.120.1.2 * 4e-33 33.5 %


:RPS:SCOP 211->312 1a76A1 a.60.7.1 * 2e-21 29.6 %


:HMM:SCOP 3->225 1mc8A2 c.120.1.2 * 2.8e-52 40.2 %

:HMM:SCOP 210->327 1b43A1 a.60.7.1 * 5.9e-23 31.9 %


:RPS:PFM 13->94 PF00752 * XPG_N 2e-05 31.6 %


:RPS:PFM 142->225 PF00867 * XPG_I 5e-17 50.0 %


:HMM:PFM 143->225 PF00867 * XPG_I 2.5e-26 45.8 83/92


:HMM:PFM 6->103 PF00752 * XPG_N 3.8e-14 33.7 92/101


:HMM:PFM 215->253 PF01367 * 5_3_exonuc 1e-05 43.6 39/101

:BLT:SWISS 1->324 FEN_HALMA e-118 64.5 %


:COIL


:SEG
SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACM57198.1
GT:GENE ACM57198.1
GT:PRODUCT XPG I domain protein
GT:DATABASE GIB00862CH01
GT:ORG hlac0
GB:ACCESSION GIB00862CH01
GB:CHROMOSOME 1
GB:LOCATION complement(1632802..1633779)
GB:FROM 1632802
GB:TO 1633779
GB:DIRECTION -
GB:PRODUCT XPG I domain protein
GB:NOTE PFAM: XPG domain protein; XPG I domain protein; SMART: Helix-hairpin-helix domain protein class 2; KEGG: hwa:HQ2418A flap endonuclease-1
GB:PROTEIN_ID ACM57198.1
GB:DB_XREF GI:222452933 InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
LENGTH 325
SQ:AASEQ MGNADLRDLAAIRDISFAEIEGSVVAVDAHNWLYRYLTTTVKWTADETYTTTDGVEVANLIGIVQGLPKFFEHDLIPVMVFDGAVTELKADEVADRREKREQAEERRVAAKERGDAVEAARLEARTQRLTDTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQLTSKGDPELMDLAATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVLDARGVEIPNAEAIRELFMDPPATDVDVDTAVNPDVDAAREYVVDEWGVAADEVERGFERIAESQVQTGLDRWT
GT:EXON 1|1-325:0|
BL:SWS:NREP 1
BL:SWS:REP 1->324|FEN_HALMA|e-118|64.5|324/326|
COIL:NAA 30
COIL:NSEG 1
COIL:REGION 116->145|
SEG 96->113|rrekreqaeerrvaaker|
BL:PDB:NREP 1
BL:PDB:REP 5->312|1rxvA|5e-45|36.5|304/305|
RP:PDB:NREP 1
RP:PDB:REP 5->324|1b43A|1e-52|32.8|317/339|
RP:PFM:NREP 2
RP:PFM:REP 13->94|PF00752|2e-05|31.6|76/99|XPG_N|
RP:PFM:REP 142->225|PF00867|5e-17|50.0|84/88|XPG_I|
HM:PFM:NREP 3
HM:PFM:REP 143->225|PF00867|2.5e-26|45.8|83/92|XPG_I|
HM:PFM:REP 6->103|PF00752|3.8e-14|33.7|92/101|XPG_N|
HM:PFM:REP 215->253|PF01367|1e-05|43.6|39/101|5_3_exonuc|
GO:PFM:NREP 4
GO:PFM GO:0004518|"GO:nuclease activity"|PF00752|IPR006085|
GO:PFM GO:0006281|"GO:DNA repair"|PF00752|IPR006085|
GO:PFM GO:0004518|"GO:nuclease activity"|PF00867|IPR006086|
GO:PFM GO:0006281|"GO:DNA repair"|PF00867|IPR006086|
RP:SCP:NREP 2
RP:SCP:REP 5->208|1a76A2|4e-33|33.5|203/207|c.120.1.2|
RP:SCP:REP 211->312|1a76A1|2e-21|29.6|98/108|a.60.7.1|
HM:SCP:REP 3->225|1mc8A2|2.8e-52|40.2|219/219|c.120.1.2|1/1|PIN domain-like|
HM:SCP:REP 210->327|1b43A1|5.9e-23|31.9|116/0|a.60.7.1|1/1|5' to 3' exonuclease, C-terminal subdomain|
OP:NHOMO 623
OP:NHOMOORG 263
OP:PATTERN 11111111-1-111112111111111111111111111111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 2133212-62112224534333233332232334433222222222324443332342433323323324223232213323333332-24453352213122423222356533222312132423425H3-323121211343343213-123643311424211421421322232H22223B4543441211113 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1--
STR:NPRED 321
STR:RPRED 98.8
SQ:SECSTR ###cccGGGcccEEccGGGGTTcEEEEEHHHHHHHHHHHcccTTcccccccTTccccHHHHHHHHHHHHHHHTTcEEEEEEccccccccccccTTccccTTHHHHHHHHHHHHccHHHHHHHHHTcGGGTHHHHHHHHHHHHHHTccEEEccccHHHHHHHHHHHTcccEEEccccHHHHTTccEEEEcTTTcEccEEEEHHHHHHHHTccHHHHHHHHHHHccTTcTccTTccHHHHHHHHHTcccGGGGTGGccGccccHHHHHHHHHccccccccccccccccHHHHHHHHTTTTcccHHHHHHHHHHHHHHTTGGGcccc#
DISOP:02AL 325-326|
PSIPRED cccccHHHHcccccccHHHHcccEEEEEcHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccHHccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHcccEEEEEcccEEEEEEcccEEEEcccccccEEEEcHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHcccccccccHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccc
//