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Halorubrum lacusprofundi ATCC 49239 (hlac0)
Chromosome : 1
Gene : ACM57198.1
DDBJ      :             XPG I domain protein
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  0/915 : Eukaryota  195/199 : Viruses  2/175   --->[See Alignment]
a.60.7c.120.1
:325 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->312 1rxvA PDBj 5e-45 36.5 %
:RPS:PDB   5->324 1b43A PDBj 1e-52 32.8 %
:RPS:SCOP  5->208 1a76A2  c.120.1.2 * 4e-33 33.5 %
:RPS:SCOP  211->312 1a76A1  a.60.7.1 * 2e-21 29.6 %
:HMM:SCOP  3->225 1mc8A2 c.120.1.2 * 2.8e-52 40.2 %
:HMM:SCOP  210->327 1b43A1 a.60.7.1 * 5.9e-23 31.9 %
:RPS:PFM   13->94 PF00752 * XPG_N 2e-05 31.6 %
:RPS:PFM   142->225 PF00867 * XPG_I 5e-17 50.0 %
:HMM:PFM   143->225 PF00867 * XPG_I 2.5e-26 45.8 83/92  
:HMM:PFM   6->103 PF00752 * XPG_N 3.8e-14 33.7 92/101  
:HMM:PFM   215->253 PF01367 * 5_3_exonuc 1e-05 43.6 39/101  
:BLT:SWISS 1->324 FEN_HALMA e-118 64.5 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACM57198.1 GT:GENE ACM57198.1 GT:PRODUCT XPG I domain protein GT:DATABASE GIB00862CH01 GT:ORG hlac0 GB:ACCESSION GIB00862CH01 GB:CHROMOSOME 1 GB:LOCATION complement(1632802..1633779) GB:FROM 1632802 GB:TO 1633779 GB:DIRECTION - GB:PRODUCT XPG I domain protein GB:NOTE PFAM: XPG domain protein; XPG I domain protein; SMART: Helix-hairpin-helix domain protein class 2; KEGG: hwa:HQ2418A flap endonuclease-1 GB:PROTEIN_ID ACM57198.1 GB:DB_XREF GI:222452933 InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918 LENGTH 325 SQ:AASEQ MGNADLRDLAAIRDISFAEIEGSVVAVDAHNWLYRYLTTTVKWTADETYTTTDGVEVANLIGIVQGLPKFFEHDLIPVMVFDGAVTELKADEVADRREKREQAEERRVAAKERGDAVEAARLEARTQRLTDTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQLTSKGDPELMDLAATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGDLWGVLDARGVEIPNAEAIRELFMDPPATDVDVDTAVNPDVDAAREYVVDEWGVAADEVERGFERIAESQVQTGLDRWT GT:EXON 1|1-325:0| BL:SWS:NREP 1 BL:SWS:REP 1->324|FEN_HALMA|e-118|64.5|324/326| COIL:NAA 30 COIL:NSEG 1 COIL:REGION 116->145| SEG 96->113|rrekreqaeerrvaaker| BL:PDB:NREP 1 BL:PDB:REP 5->312|1rxvA|5e-45|36.5|304/305| RP:PDB:NREP 1 RP:PDB:REP 5->324|1b43A|1e-52|32.8|317/339| RP:PFM:NREP 2 RP:PFM:REP 13->94|PF00752|2e-05|31.6|76/99|XPG_N| RP:PFM:REP 142->225|PF00867|5e-17|50.0|84/88|XPG_I| HM:PFM:NREP 3 HM:PFM:REP 143->225|PF00867|2.5e-26|45.8|83/92|XPG_I| HM:PFM:REP 6->103|PF00752|3.8e-14|33.7|92/101|XPG_N| HM:PFM:REP 215->253|PF01367|1e-05|43.6|39/101|5_3_exonuc| GO:PFM:NREP 4 GO:PFM GO:0004518|"GO:nuclease activity"|PF00752|IPR006085| GO:PFM GO:0006281|"GO:DNA repair"|PF00752|IPR006085| GO:PFM GO:0004518|"GO:nuclease activity"|PF00867|IPR006086| GO:PFM GO:0006281|"GO:DNA repair"|PF00867|IPR006086| RP:SCP:NREP 2 RP:SCP:REP 5->208|1a76A2|4e-33|33.5|203/207|c.120.1.2| RP:SCP:REP 211->312|1a76A1|2e-21|29.6|98/108|a.60.7.1| HM:SCP:REP 3->225|1mc8A2|2.8e-52|40.2|219/219|c.120.1.2|1/1|PIN domain-like| HM:SCP:REP 210->327|1b43A1|5.9e-23|31.9|116/0|a.60.7.1|1/1|5' to 3' exonuclease, C-terminal subdomain| OP:NHOMO 623 OP:NHOMOORG 263 OP:PATTERN 11111111-1-111112111111111111111111111111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 2133212-62112224534333233332232334433222222222324443332342433323323324223232213323333332-24453352213122423222356533222312132423425H3-323121211343343213-123643311424211421421322232H22223B4543441211113 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 321 STR:RPRED 98.8 SQ:SECSTR ###cccGGGcccEEccGGGGTTcEEEEEHHHHHHHHHHHcccTTcccccccTTccccHHHHHHHHHHHHHHHTTcEEEEEEccccccccccccTTccccTTHHHHHHHHHHHHccHHHHHHHHHTcGGGTHHHHHHHHHHHHHHTccEEEccccHHHHHHHHHHHTcccEEEccccHHHHTTccEEEEcTTTcEccEEEEHHHHHHHHTccHHHHHHHHHHHccTTcTccTTccHHHHHHHHHTcccGGGGTGGccGccccHHHHHHHHHccccccccccccccccHHHHHHHHTTTTcccHHHHHHHHHHHHHHTTGGGcccc# DISOP:02AL 325-326| PSIPRED cccccHHHHcccccccHHHHcccEEEEEcHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccHHccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHcccEEEEEcccEEEEEEcccEEEEcccccccEEEEcHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHcccccccccHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccc //