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Halorubrum lacusprofundi ATCC 49239 (hlac0)
Chromosome : 1
Gene : ACM57250.1
DDBJ      :             tRNA pseudouridine synthase
Swiss-Prot:             

Homologs  Archaea  34/68 : Bacteria  547/915 : Eukaryota  67/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:293 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   10->192 2nreA PDBj 5e-16 36.0 %
:RPS:PDB   10->249 1dj0A PDBj 2e-40 32.0 %
:RPS:SCOP  10->249 1dj0A  d.265.1.1 * 6e-41 32.0 %
:HMM:SCOP  4->265 1dj0A_ d.265.1.1 * 9.3e-47 35.2 %
:RPS:PFM   13->77 PF01416 * PseudoU_synth_1 8e-10 46.2 %
:HMM:PFM   13->114 PF01416 * PseudoU_synth_1 8.2e-15 37.5 88/105  
:HMM:PFM   150->248 PF01416 * PseudoU_synth_1 2.7e-11 27.6 98/105  
:BLT:SWISS 9->255 TRUA_HALMA 4e-65 59.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACM57250.1 GT:GENE ACM57250.1 GT:PRODUCT tRNA pseudouridine synthase GT:DATABASE GIB00862CH01 GT:ORG hlac0 GB:ACCESSION GIB00862CH01 GB:CHROMOSOME 1 GB:LOCATION complement(1686494..1687375) GB:FROM 1686494 GB:TO 1687375 GB:DIRECTION - GB:PRODUCT tRNA pseudouridine synthase GB:NOTE PFAM: tRNA pseudouridine synthase; KEGG: hma:rrnAC3188 tRNA pseudouridine synthase A GB:PROTEIN_ID ACM57250.1 GB:DB_XREF GI:222452985 InterPro:IPR001406 LENGTH 293 SQ:AASEQ MTDASAATRAFRVAYDGREYAGFQRQPHATTVEGTLLRALAKHGILDRGDGPTHATPPGYAAAGRTDAGVSAVAQTVAFEAPDWLTPRAFNGHLPGSVRVWAAADVPAGFHATHDAVRRTYRYHLYAPARVEETDHDHAVDDGRVRDALARLSGEQDFHNLTSDETGTVRDLTTTATREGDILVVEVSAGGFPRALVRRLVAAVRAVGRGTADPSLIDRLLASEPISGEFGIGPAPPEPLVLWDVSYEGVAFEVDPEAAESARVAFGERYRDARHAAAATGAIRDRIAGTDQS GT:EXON 1|1-293:0| BL:SWS:NREP 1 BL:SWS:REP 9->255|TRUA_HALMA|4e-65|59.1|242/275| SEG 194->207|ralvrrlvaavrav| SEG 269->289|ryrdarhaaaatgairdriag| BL:PDB:NREP 1 BL:PDB:REP 10->192|2nreA|5e-16|36.0|172/259| RP:PDB:NREP 1 RP:PDB:REP 10->249|1dj0A|2e-40|32.0|228/264| RP:PFM:NREP 1 RP:PFM:REP 13->77|PF01416|8e-10|46.2|65/112|PseudoU_synth_1| HM:PFM:NREP 2 HM:PFM:REP 13->114|PF01416|8.2e-15|37.5|88/105|PseudoU_synth_1| HM:PFM:REP 150->248|PF01416|2.7e-11|27.6|98/105|PseudoU_synth_1| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF01416|IPR020097| GO:PFM GO:0003723|"GO:RNA binding"|PF01416|IPR020097| GO:PFM GO:0009451|"GO:RNA modification"|PF01416|IPR020097| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF01416|IPR020097| RP:SCP:NREP 1 RP:SCP:REP 10->249|1dj0A|6e-41|32.0|228/264|d.265.1.1| HM:SCP:REP 4->265|1dj0A_|9.3e-47|35.2|250/264|d.265.1.1|1/1|Pseudouridine synthase| OP:NHOMO 701 OP:NHOMOORG 648 OP:PATTERN ------------------11-11111111111111--------111111111111111111------- 111-1---------11-----1---1-11-11111111111111--1----1-1------1-1--1-11111---11111111--1-------1-1---1----1-1----111111-------111-1111111111111----1-1-11111111111111-111--1-11111111111111111---111-11111111111111111111111111111111111111---------------------1111111-1-111111111111111---1--111111111111111--11---------11111-111-111------------11------1-11--1211111111-11111-1----11---1----------1------11-11111111-------1----1--1111-1---11----111-1-111-1-------------1-1-1-------------------------------11111111111111111111111111-11111111-1111-111-1-1-11111-111-1111111111111-11-11111111--1111111111-2211-1211-1----------------------1111111111111111111-111111-111111--111-------11111111111111111-1111111111111111111111111111111111111111111111111111-1111111111111-11---------11111111111111-111-1----------11111111111-11111111111111111-1111111111111----------11-1--1111------------11---1----------------------11-11111111-1 ------1-211---1---------------------------------------------------------1----------------1-1--21------11321--12221111--1--1-21-2-473-112-----1111-1-----11-1221---1111-11111--2-112E331-21----22------2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 232 STR:RPRED 79.2 SQ:SECSTR #########EEEEEEccTTccccccTTccccHHHHHHHHHHHGTcc######HHTccccEEEcccccTTcEEEEEEEEEEEcccccHHHHHHTccTTEEEEEEEEccTTccTTTTccEEEEEEEEEcTTTTccEEccccccHHHHHHHHGGGcEEEEcGGGcccccccEEEEEEEEEEETTEEEEEEEEccccTTHHHHHHHHHHHHHTTcccTTHHHHHHHHc##cGGGcccccccTTEEEEEEEccG############################################ PSIPRED cccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEEEEccccccccccccEEEEEEcccccHHHHHHHccccEEEEEEEEccccccccEEEcEEEEEEEEccccccccccccccccHHHHHHHHHHHccccccHHHHcccccccEEEEEEEEEcccEEEEEEEEcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc //