[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Halorubrum lacusprofundi ATCC 49239 (hlac0)
Chromosome : 1
Gene : ACM57299.1
DDBJ      :             AAA family ATPase, CDC48 subfamily
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  198/199 : Viruses  2/175   --->[See Alignment]
b.2.5b.52.2c.37.1d.31.1
:740 amino acids
:PSIPRED
:BLT:PDB   141->716 3cf1B PDBj e-170 49.7 %
:RPS:PDB   1->188 1cr5B PDBj 4e-12 11.2 %
:RPS:PDB   161->718 3cmuA PDBj 2e-89 11.5 %
:RPS:SCOP  1->85 1cz4A1  b.52.2.3 * 7e-23 36.5 %
:RPS:SCOP  95->183 1cz4A2  d.31.1.1 * 4e-13 29.8 %
:RPS:SCOP  186->455 1oz4A2  c.37.1.20 * 1e-50 57.8 %
:RPS:SCOP  492->532 1gvnB  c.37.1.21 * 1e-09 36.6 %
:RPS:SCOP  508->678 1a3qA2  b.2.5.3 * 1e-38 13.1 %
:HMM:SCOP  2->88 1cz4A1 b.52.2.3 * 7.1e-26 48.3 %
:HMM:SCOP  89->191 1cz4A2 d.31.1.1 * 3.3e-21 47.3 %
:HMM:SCOP  186->443 1e32A2 c.37.1.20 * 3.6e-70 36.8 %
:HMM:SCOP  456->723 1oz4A3 c.37.1.20 * 2.7e-75 39.9 %
:RPS:PFM   15->85 PF02359 * CDC48_N 2e-07 39.4 %
:RPS:PFM   108->178 PF02933 * CDC48_2 3e-09 53.2 %
:RPS:PFM   226->350 PF00004 * AAA 9e-35 57.6 %
:RPS:PFM   499->628 PF00004 * AAA 2e-34 53.1 %
:HMM:PFM   226->355 PF00004 * AAA 2.1e-51 61.7 128/130  
:HMM:PFM   499->629 PF00004 * AAA 2.9e-50 62.5 128/130  
:HMM:PFM   5->88 PF02359 * CDC48_N 4.2e-30 48.8 84/87  
:HMM:PFM   106->176 PF02933 * CDC48_2 2.9e-17 47.5 61/64  
:HMM:PFM   690->722 PF09336 * Vps4_C 7.8e-05 33.3 33/62  
:BLT:SWISS 1->740 CDCH_HALSA 0.0 85.0 %
:PROS 326->344|PS00674|AAA
:PROS 600->618|PS00674|AAA
:REPEAT 2|186->458|459->717
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACM57299.1 GT:GENE ACM57299.1 GT:PRODUCT AAA family ATPase, CDC48 subfamily GT:DATABASE GIB00862CH01 GT:ORG hlac0 GB:ACCESSION GIB00862CH01 GB:CHROMOSOME 1 GB:LOCATION 1730790..1733012 GB:FROM 1730790 GB:TO 1733012 GB:DIRECTION + GB:PRODUCT AAA family ATPase, CDC48 subfamily GB:NOTE KEGG: nph:NP3072A AAA-type ATPase (transitional ATPase homolog); TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase GB:PROTEIN_ID ACM57299.1 GB:DB_XREF GI:222453034 InterPro:IPR001984 InterPro:IPR003338 InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR004201 InterPro:IPR005938 InterPro:IPR011704 LENGTH 740 SQ:AASEQ MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWNTDTVRVDGFTRQNADVGIGERVTIRKAEAEKAEKLVLAPPEEASVQFGSDAAGMVKRQILKRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVDTEPDGVCLITEDTEVELREEPISGFEKTGSGITYEDIGGLQSEIQRVREMVELPMKHPQIFSKLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVVVIGATNRVDSVDPALRRPGRFDREIEIGVPDEVGRKEILQIHTRGMPLSDDVSLDHLADETHGFVGADIESLTKEAAMKALRRYLPEIDLDDEEVPPSLIDRMIVKRDDFGAALNEVEPSAMREVLVELPKISWDDVGGLSEAQQQVQESVEWPLSSPEKFDRMGVDPPKGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPTIIFFDELDSLAPSRGQEMGNNVSERVVNQLLTELDGLEEMGDVMVIGATNRPDMIDPALLRSGRFDRLVMIGQPDQEGRERILEIHTQDTPLAPDVTLREIAEITDGYVGSDLEGIAREAAIEALRDDDDAEEVEMKHFRRALESVRPTINDDILAYYEEVEEQFKGGSGNAIRDTGGKIGFQ GT:EXON 1|1-740:0| BL:SWS:NREP 1 BL:SWS:REP 1->740|CDCH_HALSA|0.0|85.0|740/742| PROS 326->344|PS00674|AAA|PDOC00572| PROS 600->618|PS00674|AAA|PDOC00572| NREPEAT 1 REPEAT 2|186->458|459->717| SEG 86->94|kaeaekaek| SEG 468->479|seaqqqvqesve| BL:PDB:NREP 1 BL:PDB:REP 141->716|3cf1B|e-170|49.7|576/723| RP:PDB:NREP 2 RP:PDB:REP 1->188|1cr5B|4e-12|11.2|170/176| RP:PDB:REP 161->718|3cmuA|2e-89|11.5|558/1937| RP:PFM:NREP 4 RP:PFM:REP 15->85|PF02359|2e-07|39.4|71/87|CDC48_N| RP:PFM:REP 108->178|PF02933|3e-09|53.2|62/66|CDC48_2| RP:PFM:REP 226->350|PF00004|9e-35|57.6|118/123|AAA| RP:PFM:REP 499->628|PF00004|2e-34|53.1|122/123|AAA| HM:PFM:NREP 5 HM:PFM:REP 226->355|PF00004|2.1e-51|61.7|128/130|AAA| HM:PFM:REP 499->629|PF00004|2.9e-50|62.5|128/130|AAA| HM:PFM:REP 5->88|PF02359|4.2e-30|48.8|84/87|CDC48_N| HM:PFM:REP 106->176|PF02933|2.9e-17|47.5|61/64|CDC48_2| HM:PFM:REP 690->722|PF09336|7.8e-05|33.3|33/62|Vps4_C| GO:PFM:NREP 4 GO:PFM GO:0005524|"GO:ATP binding"|PF02359|IPR003338| GO:PFM GO:0005524|"GO:ATP binding"|PF02933|IPR004201| GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| RP:SCP:NREP 5 RP:SCP:REP 1->85|1cz4A1|7e-23|36.5|85/91|b.52.2.3| RP:SCP:REP 95->183|1cz4A2|4e-13|29.8|84/94|d.31.1.1| RP:SCP:REP 186->455|1oz4A2|1e-50|57.8|270/270|c.37.1.20| RP:SCP:REP 492->532|1gvnB|1e-09|36.6|41/272|c.37.1.21| RP:SCP:REP 508->678|1a3qA2|1e-38|13.1|168/184|b.2.5.3| HM:SCP:REP 2->88|1cz4A1|7.1e-26|48.3|87/0|b.52.2.3|1/1|ADC-like| HM:SCP:REP 89->191|1cz4A2|3.3e-21|47.3|91/94|d.31.1.1|1/1|Cdc48 domain 2-like| HM:SCP:REP 186->443|1e32A2|3.6e-70|36.8|258/258|c.37.1.20|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 456->723|1oz4A3|2.7e-75|39.9|268/293|c.37.1.20|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 8493 OP:NHOMOORG 1175 OP:PATTERN 44454466666666672322222588A88666343333333335555586787343454331222244 2333522222222245233-332244333334455533543434422131113342321134214344432222232211213111111112121111-21512141231111111111111111322332234333333321223D6EA77865665555557669BCFA5555555555554342211121111111111111111121221211111121111111124411111111111111111111111111111112111111111211111111112111111111111111111111111111111111111124435454444425233334222333125335353333322253331111215211411111312553242231511111111112-57324233322122222345422112112312141121122222222311114111111111111111111111111111212512222112111322423222224436222212245253311531342312674131342211111111111222212243112321212111343244337446567362423233333323222222234345111112333121223332313242143221331-162121111111111111111-111121-11111211121111111111111169111111211211111111111111111111111111111111211111111132422111111122-2112112111112112422331122212215121112111111111211111111111221131111211111121222222111111112218CNA1-11111111111211111111131111111331 IJDFQPR8*XZJRQUPOMKJLLKMJLJKLNJKJKJKJIHIJKJJJILJKKMNONJLPKJJJKJKLMLMELNLKKKMMAMNMKJKLKKL-NfNOPLLKIKLJIISVXCR*ZohpdjfmQOPLTVShiKxR**d2gcyLNKKdMScONRPRLVQOdOdTWWSjXTUSZOfSTwUaVQPYca*WVWaa*u**L*xZdXYTYl -----------------------------------------------------------------------------------------------1--------------------------------------------------------------------------1---- PSIPRED ccccEEEEcccccccccccEEEEcHHHHHHcccccccEEEEEccccEEEEEEEcccccccccEEEEcHHHHHccccccccEEEEEEcccccccEEEEEEcccccccccHHHHHHHHHHHHccccccccEEEEEccccHHHHccccEEEEEEEEcccccccEEEcHHHHHHHccHHHcccccccccccHHHHHcHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHcccccccccHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHccHHHHccccccEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHHHHcHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccEEEEEcHHHHHHHHcHHHHHHHHHHHHHHHccccEEEEccHHHHHHHcccccccHHHHHHHHHHHHHHccccccccEEEEEEcccHHHccHHHcccccccEEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHcccccccc //