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Halorubrum lacusprofundi ATCC 49239 (hlac0)
Chromosome : 1
Gene : ACM57905.1
DDBJ      :             TRAP transporter solute receptor, TAXI family
Swiss-Prot:             

Homologs  Archaea  17/68 : Bacteria  198/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:349 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   69->347 1us5A PDBj 9e-45 36.9 %
:RPS:PDB   100->310 1blfA PDBj 8e-13 9.0 %
:RPS:SCOP  66->347 1us4A  c.94.1.1 * 2e-55 35.8 %
:HMM:SCOP  65->348 1us5A_ c.94.1.1 * 1.1e-60 35.2 %
:HMM:PFM   149->240 PF09084 * NMT1 9.6e-10 24.2 91/216  
:HMM:PFM   15->66 PF01391 * Collagen 4.3e-08 32.7 52/60  
:HMM:PFM   4->21 PF10399 * UCR_Fe-S_N 0.00026 50.0 18/41  
:BLT:SWISS 74->347 BCSP_BRUME 1e-43 37.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACM57905.1 GT:GENE ACM57905.1 GT:PRODUCT TRAP transporter solute receptor, TAXI family GT:DATABASE GIB00862CH01 GT:ORG hlac0 GB:ACCESSION GIB00862CH01 GB:CHROMOSOME 1 GB:LOCATION complement(2326021..2327070) GB:FROM 2326021 GB:TO 2327070 GB:DIRECTION - GB:PRODUCT TRAP transporter solute receptor, TAXI family GB:NOTE TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: hma:rrnAC2580 immunogenic protein GB:PROTEIN_ID ACM57905.1 GB:DB_XREF GI:222453640 InterPro:IPR006311 InterPro:IPR011852 LENGTH 349 SQ:AASEQ MSSHQTRRRFLEATGVAGVAALAGCSGNGGDGSDGSDGSDGSDGSDGSDGSDGSDGSDGSDGGDGETRLTWHAGGTGGTYFPLSNEIKTIVDANTDFTLNVQSTGASVENVGSLADGSADFALIQNDIASFARNGTGIDAFIDNPIENLRGVATLYPETITLVTLAENDISSVDDLSGATINTGDLGSGTQVNAVQILDSLGVTDYNEQNAGFSQASEQLANGDIDAAFVVGGWPVGAIEELANTNDIEIVPIGGDSREAVKEDASWFADDTIPGGTYSGIDEDVETVAVQAMIATNAEVPDETVRTVTAAIFDNLDELSIKTEFITVDTAQDGMSIELHDGAAAYFDA GT:EXON 1|1-349:0| BL:SWS:NREP 1 BL:SWS:REP 74->347|BCSP_BRUME|1e-43|37.3|271/329| SEG 13->24|atgvagvaalag| SEG 26->65|sgnggdgsdgsdgsdgsdgsdgsdgsdgsdgsdgsdggdg| BL:PDB:NREP 1 BL:PDB:REP 69->347|1us5A|9e-45|36.9|279/297| RP:PDB:NREP 1 RP:PDB:REP 100->310|1blfA|8e-13|9.0|211/685| HM:PFM:NREP 3 HM:PFM:REP 149->240|PF09084|9.6e-10|24.2|91/216|NMT1| HM:PFM:REP 15->66|PF01391|4.3e-08|32.7|52/60|Collagen| HM:PFM:REP 4->21|PF10399|0.00026|50.0|18/41|UCR_Fe-S_N| RP:SCP:NREP 1 RP:SCP:REP 66->347|1us4A|2e-55|35.8|282/298|c.94.1.1| HM:SCP:REP 65->348|1us5A_|1.1e-60|35.2|284/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 313 OP:NHOMOORG 217 OP:PATTERN 11-----------------11--211111-11-------------------------1111---1--- ---------------------1---1------1-----1--1----------11------11--3-1111------------------------------------------------------------------11111-----1212--------------1-----1------------11131---------------------1311-----1-112--------1--------------------------------------------------------------------------------------------31--------------------------11-111-1---------------------------121--11111211111111112---1-----3-1-----------111-1--6313434422-------------3221111111111--1111111111111-----------3333------------------------1-1-11---------112----1----------------11--25-1-1---1----1-1--1----------2-11-1----------------11----331-2---1-1-1111-1-1111-1-11-1--2-311--------------------------------------------------1-----------------------------------------------------2341113-1-----1112-------11---1111----31---3-------------22232222233122-----------------1------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 284 STR:RPRED 81.4 SQ:SECSTR #################################################################TcccEEEcEcccHHHHHHHHHHHHHHHTTcccccEEEEEccHHHHHHHHHHTcccEEEEcHHHHHHHHTTTcEEEEEcccccccTTTcccccEEEEEEEETTcTTcccGGGTTcEEEEccTTcTTHHHHHHHHHHHTcccGGGTTccTTcTTcTTcccccccccTTcccTTcTTcHHHHHHHHHHTTcccEEEEEHHHHHHTcTTccccTTTTTccGGGEEEEcTTccEEETTcccccccEEEccTHHHHHHHHEccEEEEccccccHHHHHHHHHHHHHHHcT PSIPRED cccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHcccccEEEEcccHHHHHHHcccccHHcccccccEEEEEEEcccEEEEEEEcccccccHHHHcccEEEEcccccHHHHHHHHHHHHccccHHHEEEccHHHHHHHHHcccccEEEEEccccHHHHHHHHccccEEEEEccHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHcc //