Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59402.1
DDBJ : Dihydrouridine synthase TIM-barrel protein yjbN
Swiss-Prot:
Homologs Archaea 5/68 : Bacteria 812/915 : Eukaryota 179/199 : Viruses 0/175 --->[See Alignment]
c.1.4
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 53->276 1vhnA PDBj 2e-10 24.2 %
:RPS:PDB 24->320 3c52B PDBj 6e-33 9.2 %
:RPS:SCOP 21->335 1vhnA c.1.4.1 * 2e-62 20.5 %
:HMM:SCOP 20->336 1vhnA_ c.1.4.1 * 7.8e-80 37.5 %
:RPS:PFM 23->316 PF01207 * Dus 4e-51 43.3 %
:HMM:PFM 24->324 PF01207 * Dus 1.8e-93 37.6 290/310
:BLT:SWISS 21->336 DUSA_VIBVU e-124 64.1 %
:PROS 103->121|PS01136|UPF0034
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59402.1
GT:GENE ABA59402.1
GT:PRODUCT Dihydrouridine synthase TIM-barrel protein yjbN
GT:DATABASE GIB00281CH01
GT:ORG noce0
GB:ACCESSION GIB00281CH01
GB:LOCATION 3346098..3347111
GB:FROM 3346098
GB:TO 3347111
GB:DIRECTION +
GB:PRODUCT Dihydrouridine synthase TIM-barrel protein yjbN
GB:PROTEIN_ID ABA59402.1
GB:DB_XREF GI:76884721 InterPro:IPR001269 InterPro:IPR003009 InterPro:IPR004653
LENGTH 337
SQ:AASEQ MLFSYDCKKTIQMADYSKAYKISVAPMMEWTDRHCRYFLRLISHRALLYTEMVTAGALIHGNRARFLAYHKSEHPLALQLGGSHPEELALCAQMAEDYGFDEVNLNVGCPSNRVQSGRFGACLMAEPELVAECVAAMAQATQIPVTVKTRIGIDEQDSYEALDHFISTVAQAGCRTFIIHARKAWLQGLSPKENREKPPLRYDVVRTIKQDFPQLTVIINGGITTLEEISEHLELLDGVMIGRAAYHNPYLLAQVDRNFYGDFHPFLTRHEIIEAFLPYVAEQLVQGVYLNHMTRHILGLFQGQPGARAWRRHLSENAHRPGAGIEIIREALRQMPC
GT:EXON 1|1-337:0|
BL:SWS:NREP 1
BL:SWS:REP 21->336|DUSA_VIBVU|e-124|64.1|315/326|
PROS 103->121|PS01136|UPF0034|PDOC00874|
BL:PDB:NREP 1
BL:PDB:REP 53->276|1vhnA|2e-10|24.2|207/299|
RP:PDB:NREP 1
RP:PDB:REP 24->320|3c52B|6e-33|9.2|284/295|
RP:PFM:NREP 1
RP:PFM:REP 23->316|PF01207|4e-51|43.3|282/303|Dus|
HM:PFM:NREP 1
HM:PFM:REP 24->324|PF01207|1.8e-93|37.6|290/310|Dus|
GO:PFM:NREP 4
GO:PFM GO:0008033|"GO:tRNA processing"|PF01207|IPR001269|
GO:PFM GO:0017150|"GO:tRNA dihydrouridine synthase activity"|PF01207|IPR001269|
GO:PFM GO:0050660|"GO:FAD binding"|PF01207|IPR001269|
GO:PFM GO:0055114|"GO:oxidation reduction"|PF01207|IPR001269|
RP:SCP:NREP 1
RP:SCP:REP 21->335|1vhnA|2e-62|20.5|297/305|c.1.4.1|
HM:SCP:REP 20->336|1vhnA_|7.8e-80|37.5|299/305|c.1.4.1|1/1|FMN-linked oxidoreductases|
OP:NHOMO 1884
OP:NHOMOORG 996
OP:PATTERN -------------------------------------------------1111--------------1 111-11-11111-111111-111111111111-1111111----11111111111111--1---111111-11111111-11-1----111111111--111111211111111111111111121111111111111111---1-221122211222222222211222122122222221222211--1112222222222222222111122222-113121-----112111111111111111111112111111111133111111111111111111111--11111111-11111111111111111111111111111111111111111111111211111-12111-11--11111111-121-2111211111222222222221222122222111-11121111212122222222222222222222212222211111111111111121111111111111111111-111111-111111112222222222211111112211111222232322233322211222121222111133333333311112232113211-12111-121121121----21111111111111--1-------11-1111333333323233333333333333333333--21212--1---33333333333333333-3333333333333333333333333333333333333333333322233331-333333333333--121111122222323333333332332333333333333333333333333333333333222222222233333233233333222222222211111-1133222222222222111----1---1--------1--------11--111-1-1- 2122445-31323332211111111111111111-11111111111-1111111-11-111-222122222232311-1122222223-14-221321-211266423937374444111-14263-2-6F4-33811--412322221-6--5255444542434-422223342444R7644443441439433334 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 337
STR:RPRED 100.0
SQ:SECSTR HHcTccGGHHHcEEcccHHHHGGcccHHHHHHHHHHHTccEHHHHHHHHHHHHTccEEEEEEHHHHHHHcHHHHHHHHHHHHHHcTTccEEEEEEEEccHHHHHHHHHHTccEEEEccTTccHHHHHHHHHHHHHHHHHHHHTTcEEEEEEccccccccccHHHHHHHHHHHcccEEEEccccccHHHTccccccccccccHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHTTcccTTcccccHHHHHHHHHHTEEEEEEcccccHHHHHHHHHHHHHHHHHcTTcccHHHHHHHHHHHHHHHHHHHHHHHTcTTcccTcccccHHHHHHHcE
DISOP:02AL 1-2|
PSIPRED ccccccccccEEEcEEEEcccEEEEccccccHHHHHHHHHHHccccEEEEcEEEcHHHHcccHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHccccEEEEccccccHHHHcccccccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEccHHHccccccccccccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccc
//
[GTOP]
