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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK85928.2
DDBJ      :             putative metalloprotease M20 family
Swiss-Prot:             

Homologs  Archaea  17/68 : Bacteria  418/915 : Eukaryota  170/199 : Viruses  0/175   --->[See Alignment]
c.56.5d.58.19
:463 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->451 2zogA PDBj 1e-40 26.1 %
:RPS:PDB   7->461 3dljB PDBj 2e-58 25.2 %
:RPS:SCOP  16->216 1vgyA1  c.56.5.4 * 3e-38 30.8 %
:RPS:SCOP  300->374 1cg2A2  d.58.19.1 * 7e-09 12.0 %
:HMM:SCOP  3->461 1lfwA1 c.56.5.4 * 9.6e-65 39.5 %
:RPS:PFM   85->207 PF01546 * Peptidase_M20 1e-10 40.2 %
:HMM:PFM   85->458 PF01546 * Peptidase_M20 1.4e-34 31.1 167/171  
:BLT:SWISS 4->452 CPGL_CANAL 2e-51 31.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK85928.2 GT:GENE AAK85928.2 GT:PRODUCT putative metalloprotease M20 family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(110444..111835) GB:FROM 110444 GB:TO 111835 GB:DIRECTION - GB:PRODUCT putative metalloprotease M20 family GB:PROTEIN_ID AAK85928.2 GB:DB_XREF GI:159139494 LENGTH 463 SQ:AASEQ MTDVSPILSNADDNLTSSLERLFELVRIPSISTDPAYKAECRKAADWLVRTLSALGFTASVRDTAGHPMVVAHHDAATKDAPHVLFYGHYDVQPVDPLELWENDPFEPAIKDIGAGRKVITGRGTADDKGQLMTFVEACRAYKAVNGVLPVRVTILFEGEEESGSPSLKPFLDANAQELKADYALVCDTGMWDRDTPAIAAALRGLVGEEIVITAADRDLHSGLFGGAAANPIHILTDILAGLHDETGRVTLAGFYDGVEEPPANIKASWETLGRSAEAFLGEVGLSVPSGEKGRSVLEQTWARPTAEVNGIIGGYTGDGFKTVIAAKASAKVSFRLVGEQNPAAIRDSFRAYVRSKIPADCSVEFHEHGASPAIQLSYDSPVLTKAKNALSEEWPKPAVVIGMGGSIPIVGDFQKMLGMDSLLVGFGLTDDRIHSPNEKYELQSFHKGIRSWVRILDALAAK GT:EXON 1|1-463:0| BL:SWS:NREP 1 BL:SWS:REP 4->452|CPGL_CANAL|2e-51|31.7|441/485| BL:PDB:NREP 1 BL:PDB:REP 1->451|2zogA|1e-40|26.1|444/478| RP:PDB:NREP 1 RP:PDB:REP 7->461|3dljB|2e-58|25.2|449/467| RP:PFM:NREP 1 RP:PFM:REP 85->207|PF01546|1e-10|40.2|117/308|Peptidase_M20| HM:PFM:NREP 1 HM:PFM:REP 85->458|PF01546|1.4e-34|31.1|167/171|Peptidase_M20| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF01546|IPR002933| GO:PFM GO:0016787|"GO:hydrolase activity"|PF01546|IPR002933| RP:SCP:NREP 2 RP:SCP:REP 16->216|1vgyA1|3e-38|30.8|185/262|c.56.5.4| RP:SCP:REP 300->374|1cg2A2|7e-09|12.0|75/113|d.58.19.1| HM:SCP:REP 3->461|1lfwA1|9.6e-65|39.5|263/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 928 OP:NHOMOORG 605 OP:PATTERN --1---1211111112---------------------------1----------1--1---1----11 12313111111111-1111-1111111111111111121121--1211111112111111211131322211111111----1-----1111-1111--11111211111-------11111111-----------34444---21-------------------------------------31222---1-----------------21----------11--------11----------------------1-21---------21---111---111111111111111111111-------------11111-1111----------------------------2-----------1---------1-11---11111112321111111111111111111-11211212121-311411223311211--1411211221--------2111-------11111------------------------111111-22222222111-22332222-1221-1---111-11211312123--1--1-1-1111111111-1---1-------------------1-111122-1---1-------------------1-11----11---------------------------1111------1134--11111111111-111111111111111111111122--1----------------111111111--11111111111---1111112222-11-2--------------------------111111211-1111-212---------1--------------1111-11-11------1-----------------------------------1---------------1--11 ----122-932-112222212232223222222-212222222222332212322222211132222212222222212221122211-24222232222212342-1--2272214-112122332414U2-344-22222223-221-211443233112-1111111-221-222-----131--12--112-221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 463 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHHHHHHTHHHHHHHHHHHHTcccccccHHHHHHHHHHHHHHHHHHHHTTcEEEEEcEEEcccEEEEEEcccTTccEEEEEEEcccccccGGGTccccTTccEEETTEEEcTEEEcTTTTTTHHHHHHHHHHHHHHHHTTcccccEEEEEEEccGGGTcTTHHHHHHHTTTTTTTTccEEEEcccccccccEEEEEEcEEEEEEEEEEcccccEETTTTTTccccHHHHHHHHHTTcccTTcccccTTTTTTcccccHHHHHHHHTccccHHHHHHHHTccccccccHHHHHHHHHTccEEEEEEEEccccccccccEEccEEEEEEEEEEcTTccHHHHHHHHHHHHHHTTTcccEEEEEEEEEEccEEcccccGGGHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHcccEEEcccccTTccTTcTTcEEEHHHHHHHHHHHHHHHHHHHcH DISOP:02AL 1-1| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEccccccccEEEEEEcccccccccccccccccccEEEEcccccccEEEccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEcccccccccccEEEEEEEEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHcccccEEEEEEEcccccccccEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHcccEEEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHcc //