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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK85985.2
DDBJ      :             putative malate dehydrogenase
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  224/915 : Eukaryota  78/199 : Viruses  0/175   --->[See Alignment]
c.122.1
:329 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->329 1wtjB PDBj 1e-58 38.1 %
:RPS:SCOP  2->329 1nxuA  c.122.1.1 * 3e-79 22.0 %
:HMM:SCOP  1->329 1rfmA_ c.122.1.1 * 1.5e-99 42.6 %
:RPS:PFM   4->329 PF02615 * Ldh_2 3e-55 43.1 %
:HMM:PFM   1->328 PF02615 * Ldh_2 4.1e-73 31.0 326/335  
:BLT:SWISS 1->318 Y1252_PSEAE 4e-50 38.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK85985.2 GT:GENE AAK85985.2 GT:PRODUCT putative malate dehydrogenase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 169337..170326 GB:FROM 169337 GB:TO 170326 GB:DIRECTION + GB:PRODUCT putative malate dehydrogenase GB:PROTEIN_ID AAK85985.2 GB:DB_XREF GI:159139523 LENGTH 329 SQ:AASEQ MKFSIAEAEDLVSSIFERNGVLPQNARSVAKALVASEAAGQGGHGFRRIPVYVRQARVGKVDGQARPVVRRVKPGVLSIDANHGYAYPAIDCALEELPEMARQQGIALAAIHRSHHAGVMALTVERFAEMGLVALMFANAPASMAPWGGHTPLYGTNPIAFAAPIGGADPLVIDLALSKVARGKIMAARQKGETIPGDWALDRNGRPTTDPEEAIAGTMVPAGEAKGAALALMVEIMAAAVTGGNFAFQASSLLDDKGAPPSLGHTIIAIDPVSSGGAAFTERLALIAGEIEKQENVRLPGRRSQGIRKQALESGIAIESDILAEIQSL GT:EXON 1|1-329:0| BL:SWS:NREP 1 BL:SWS:REP 1->318|Y1252_PSEAE|4e-50|38.2|314/334| BL:PDB:NREP 1 BL:PDB:REP 10->329|1wtjB|1e-58|38.1|320/337| RP:PFM:NREP 1 RP:PFM:REP 4->329|PF02615|3e-55|43.1|325/335|Ldh_2| HM:PFM:NREP 1 HM:PFM:REP 1->328|PF02615|4.1e-73|31.0|326/335|Ldh_2| GO:PFM:NREP 3 GO:PFM GO:0008152|"GO:metabolic process"|PF02615|IPR003767| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02615|IPR003767| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02615|IPR003767| RP:SCP:NREP 1 RP:SCP:REP 2->329|1nxuA|3e-79|22.0|323/332|c.122.1.1| HM:SCP:REP 1->329|1rfmA_|1.5e-99|42.6|324/344|c.122.1.1|1/1|L-sulfolactate dehydrogenase-like| OP:NHOMO 574 OP:NHOMOORG 326 OP:PATTERN -----11-111111-1----------------11111111111----------11-1-------1--- 1-1-----111---------------------------3-------------------------1-1--------------2-----------------------111-3-----------------------------------11---------------------------------------11---1-----------------1-22-1------11--------1----------------2----1------1---2211----------------------------------------------------------1-------------11----1--1------22---------------------------1-311--11211-11111111111---2--2-253--2331213333543---1234-1--122--------------1------------------------------2--1--155362332322111-22221111-122-2443------1-11--2-441-------1--------------------------1----------------1-----------------------------------1--1--------------------------------3-21---3225355533-233345433325333333423313--13-3221333332322232212221------------------------------211111-1--1-1-111----------1-11111411-2221-111-----------1---------1-------------------1-------------------------------------------2---------1- ---------------11111111212111111111111-1111111--12111111111111------------------------------1--------------13-12211-------------------------------------------1231111126313221----17111-----11--11----2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 328 STR:RPRED 99.7 SQ:SECSTR #EEcHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTcGGGTGGGHHHHHHHHHTTcccTTcccEEEEEETTEEEEEcTTccHHHHHHHHHHHHHHHHHHHcEEEEEEEEEEcccccHHHHHHHHHTTcEEEEEEccccccccTTccccccccccEEEEEEETTEEEEEEEEccccccHHHHHHHHHTTcccccccEEcTTccEEccHHHHHTcEEccTTTHHHHHHHHHHHHHHTTTTccccTTccccTTcTTccccEEEEEEEEEcTTTTccccHHHHHHHHHHHHHHTTccccTTHHHHHHHHHHHHHcEEEEHHHHHHHHHH DISOP:02AL 1-1| PSIPRED ccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccEEEEEccccEEEEEcccccHHHHHHHHHHHHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccEEEEEEcccccEEEEEEcccHHHHHHHHHHHHcccccccccEEcccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHc //