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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86002.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  437/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.190.1
:245 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->111 3ic7B PDBj 2e-05 29.0 %
:BLT:PDB   88->245 2fa1A PDBj 3e-08 30.0 %
:RPS:PDB   15->244 3eetA PDBj 8e-26 22.4 %
:RPS:SCOP  15->80 1e2xA1  a.4.5.6 * 3e-13 27.3 %
:RPS:SCOP  88->245 2fa1A1  d.190.1.2 * 3e-26 25.5 %
:HMM:SCOP  6->95 1v4rA1 a.4.5.6 * 2.7e-16 33.3 %
:HMM:SCOP  88->244 2fa1A1 d.190.1.2 * 3.8e-35 34.0 %
:RPS:PFM   18->78 PF00392 * GntR 1e-06 42.6 %
:RPS:PFM   109->237 PF07702 * UTRA 6e-13 32.6 %
:HMM:PFM   102->239 PF07702 * UTRA 4.4e-35 31.9 138/141  
:HMM:PFM   17->78 PF00392 * GntR 3.1e-19 41.9 62/64  
:BLT:SWISS 7->244 Y6150_RHIME 7e-70 52.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86002.1 GT:GENE AAK86002.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 185021..185758 GB:FROM 185021 GB:TO 185758 GB:DIRECTION + GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID AAK86002.1 GB:DB_XREF GI:15155067 LENGTH 245 SQ:AASEQ MSPVAAMKRKNGVALWRQIADRIRGEIAAGDHDETGMLPPEMTLAEKFGVNRHTVRSAIAALASEGILEPMQGRGTMIARKERLSFPISLRTRFTAGIGDQVKEMEALLLSHTTEPASADLAARLQLPSGAPLVRLETLRKADTRPVSRSTTWFPADRFAGIGEAYRKSGSITAAFKALGVADYVRISTVISAIHADTQDLADLELSPGAILLVTQALNADMDGVPVQYAVSRFSADTVEFTVEN GT:EXON 1|1-245:0| BL:SWS:NREP 1 BL:SWS:REP 7->244|Y6150_RHIME|7e-70|52.9|238/244| BL:PDB:NREP 2 BL:PDB:REP 14->111|3ic7B|2e-05|29.0|93/108| BL:PDB:REP 88->245|2fa1A|3e-08|30.0|150/159| RP:PDB:NREP 1 RP:PDB:REP 15->244|3eetA|8e-26|22.4|223/238| RP:PFM:NREP 2 RP:PFM:REP 18->78|PF00392|1e-06|42.6|61/64|GntR| RP:PFM:REP 109->237|PF07702|6e-13|32.6|129/141|UTRA| HM:PFM:NREP 2 HM:PFM:REP 102->239|PF07702|4.4e-35|31.9|138/141|UTRA| HM:PFM:REP 17->78|PF00392|3.1e-19|41.9|62/64|GntR| GO:PFM:NREP 6 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| GO:PFM GO:0003677|"GO:DNA binding"|PF07702|IPR011663| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF07702|IPR011663| GO:PFM GO:0045449|"GO:regulation of transcription"|PF07702|IPR011663| RP:SCP:NREP 2 RP:SCP:REP 15->80|1e2xA1|3e-13|27.3|66/73|a.4.5.6| RP:SCP:REP 88->245|2fa1A1|3e-26|25.5|157/158|d.190.1.2| HM:SCP:REP 6->95|1v4rA1|2.7e-16|33.3|90/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 88->244|2fa1A1|3.8e-35|34.0|156/0|d.190.1.2|1/1|Chorismate lyase-like| OP:NHOMO 1052 OP:NHOMOORG 439 OP:PATTERN -------------------------------------------------------------------- -1126---1111--21111-12---6111111534324643-1--32--1--423--3--21113243E41-------1---3-------1----------------1-1--------------------------1-------------11----------------1--------------21-------13222112222111-124422242222332316222222-21-------------------311-13-1111221111312111111111122212222222222222111111111111113211133321--3-1111111-1-11--1111--11-2----12-2--1--1-1111-----122--------212---1112144444443444---2--3-2-3--4443122224322111-1332113224--------1----11------------------------------------13314777776276766675777744A55675311442121121--2412211-1122----------111------12-------1-1--22-1----1--1-------------------------1123--2-----11------------------------1------433112-5554542466-555653265654444544224212---2213121332232333254334452-111121111122---------------133---------------11111------15545314422113-133---------1----------11---------------------------------------------------------------11---3-1-1-- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------4-----------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 245 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHTcccccHHHHHHHHHHHHHHHTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHTTTcEEEcccEEEccEEEEccccccccccHHHHHcccTcTccEEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEEEETTEEEEEEEEEHHHHTTcTTcTTccTTcHHHHHHTTcccccEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEEETTEEEEEEEEEEETTTEEEEccc DISOP:02AL 1-14| PSIPRED ccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccEEEEEccccHHHHHHHHccHHHHHHHHccHHHEEEEEEEEEcccHHHHHHHccccccHHHEEEHHHHccccEEEEEEEcccHHHHccccHHHHccccHHHHHHHHccccEEEEEEEEEEEcccHHHHHHHcccccccEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEc //