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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86049.2
DDBJ      :             lysozyme
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  183/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:365 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   158->359 2wagA PDBj 5e-42 41.0 %
:RPS:SCOP  160->352 1jfxA  c.1.8.8 * 2e-46 35.8 %
:HMM:SCOP  156->364 1jfxA_ c.1.8.8 * 1.3e-66 37.8 %
:RPS:PFM   163->335 PF01183 * Glyco_hydro_25 8e-33 45.2 %
:HMM:PFM   163->340 PF01183 * Glyco_hydro_25 7.4e-58 35.6 174/181  
:BLT:SWISS 25->93 CA170_BOVIN 5e-04 33.8 %
:BLT:SWISS 155->361 YEGX_ECOLI 1e-40 43.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86049.2 GT:GENE AAK86049.2 GT:PRODUCT lysozyme GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 233224..234321 GB:FROM 233224 GB:TO 234321 GB:DIRECTION + GB:PRODUCT lysozyme GB:PROTEIN_ID AAK86049.2 GB:DB_XREF GI:159139552 LENGTH 365 SQ:AASEQ MRSSAVPALLFGCLLLGGCTSSSGPESLMAGLPSKETTSSVKPSAPVPQASVGTQPITAQPRQEVLAWGGPVPDEPKAFSAVTPKASLPQNAPEIRLPVPSQTGMVRPAERPMERPVQLAMAAAPAASAGAQIRSRIFRSSFSDAKPINFGRVQPRHFQVHGVDVSRWQANIDWPQLRTRGANFAFIKATDGGDHLDPMFRTNWQRAKEAGIRRGAYHFFYWCRNASEQADWFIRNVPRDPDALPPVIDVEYNGESSCKMRHSRERVLEKMRVFMDKLERHYGQRPIIYTAPDFYKDNLQGEFHDYPFWLRAVAQHPSAVYPGRKWLFWQYSGSGLSHGVDGRIDLNVFNGSEESWHRWVDRRSS GT:EXON 1|1-365:0| BL:SWS:NREP 2 BL:SWS:REP 25->93|CA170_BOVIN|5e-04|33.8|68/901| BL:SWS:REP 155->361|YEGX_ECOLI|1e-40|43.0|200/272| SEG 9->24|llfgclllggctsssg| SEG 120->131|amaaapaasaga| SEG 133->143|irsrifrssfs| BL:PDB:NREP 1 BL:PDB:REP 158->359|2wagA|5e-42|41.0|200/217| RP:PFM:NREP 1 RP:PFM:REP 163->335|PF01183|8e-33|45.2|166/180|Glyco_hydro_25| HM:PFM:NREP 1 HM:PFM:REP 163->340|PF01183|7.4e-58|35.6|174/181|Glyco_hydro_25| GO:PFM:NREP 3 GO:PFM GO:0003796|"GO:lysozyme activity"|PF01183|IPR002053| GO:PFM GO:0009253|"GO:peptidoglycan catabolic process"|PF01183|IPR002053| GO:PFM GO:0016998|"GO:cell wall macromolecule catabolic process"|PF01183|IPR002053| RP:SCP:NREP 1 RP:SCP:REP 160->352|1jfxA|2e-46|35.8|193/217|c.1.8.8| HM:SCP:REP 156->364|1jfxA_|1.3e-66|37.8|209/0|c.1.8.8|1/1|(Trans)glycosidases| OP:NHOMO 279 OP:NHOMOORG 203 OP:PATTERN -------------------------------------------------------------------- ----311----111----------------------1111-111--21---32111-------1215333-----1--11--------1111-------1111--1-1-1-----------------------------------------------------------1------------------------1111121--1--11---11--111--------------4--------------------1-1-11------1--111-111---------------------------------------------------451----2-222--3311311-----42------------------1------------11-----------12221122222-1111111123--222133233322---1-1-11111-11-------------------------------------------11-11-1-----------------------------------------------------------------------------------------------------1--------------1----------------------------------------------------------------1111111111-1111111111111111111-------------------------1111111------------------------------------------------1111-1-------------------11-----------------------------------1-----------11------------------------------------------------- -------------------32221-12------111------------11--------1111---------------------------1----1-------1----------------------------------------------------------------------------------------2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 55.3 SQ:SECSTR #############################################################################################################################################################cccEEEEEcGGGccccHHHHHTTTccEEEEEEEETTTEEcTTHHHHHHHHHTcccEEEEEEEccTTccHHHHHHHHHHHccccTTccccEEEEcccTTGGTGccccHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHTTTccTTcEEEEEcccccccccTTcccccEEEEEcccccccTTcccEEEEEcccHHHHHTT###### DISOP:02AL 1-3,20-144,363-366| PSIPRED ccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHccccEEEEEEEccccEEcccHHHHHHHHHHccccEEEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccEEEEEEcHHHHHHHHHHHHHccccEEEccccccccccccccEEEEEEcccEEEccccccccccEEcccHHHHHHHHccccc //