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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86080.1
DDBJ      :             transcriptional regulator, AraC family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  282/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1c.23.16
:327 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   216->323 1ti9A PDBj 3e-09 28.7 %
:RPS:PDB   99->211 3bhnA PDBj 7e-15 18.3 %
:RPS:PDB   223->323 1bl0A PDBj 5e-21 28.7 %
:RPS:SCOP  14->201 1j42A  c.23.16.2 * 3e-12 16.9 %
:RPS:SCOP  222->323 1v4aA1  a.24.16.4 * 9e-18 13.7 %
:HMM:SCOP  7->202 1pe0A_ c.23.16.2 * 4e-32 32.8 %
:HMM:SCOP  222->273 1d5yA1 a.4.1.8 * 3.8e-10 32.7 %
:HMM:SCOP  276->323 1bl0A2 a.4.1.8 * 1.7e-08 31.2 %
:RPS:PFM   100->183 PF01965 * DJ-1_PfpI 8e-08 40.7 %
:RPS:PFM   285->323 PF00165 * HTH_AraC 4e-04 38.5 %
:HMM:PFM   238->273 PF00165 * HTH_AraC 8.6e-10 30.6 36/42  
:HMM:PFM   287->314 PF00165 * HTH_AraC 0.00011 25.9 27/42  
:HMM:PFM   93->186 PF01965 * DJ-1_PfpI 1.4e-09 24.7 93/148  
:BLT:SWISS 1->150 YCP1_STRLI 2e-05 29.5 %
:BLT:SWISS 121->323 GLXA_RHIME 2e-14 27.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86080.1 GT:GENE AAK86080.1 GT:PRODUCT transcriptional regulator, AraC family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(261540..262523) GB:FROM 261540 GB:TO 262523 GB:DIRECTION - GB:PRODUCT transcriptional regulator, AraC family GB:PROTEIN_ID AAK86080.1 GB:DB_XREF GI:15155157 LENGTH 327 SQ:AASEQ MDKGGTRVIPFYTLVPPHALLLDIAGPLQVIRYANNEQNDVFFDCRYIAAQEKQQSSIGLGICGLETLPATLPENAFLLISGSTSRSESEPETRRERQALAAWLRRVVGLDTTVISICSGALLAGEAGLFDGRSCTTHSDCIETLRRVAPLSQVAENRLFVEDGNRFSSAGISTGIDLMLHVVSRLTSLAVAARIAQTMVVYLRRNGNDPQISPWLTGRNHMHPAIHRVQDRVMAEPARDWSLERLADIAALSERHLSRLFREHTGISVIDYVNLMRVNLARDILSNSRLDMEAIAERAGFASARHLRRVWQQHNRYPPSHYRGFQA GT:EXON 1|1-327:0| BL:SWS:NREP 2 BL:SWS:REP 1->150|YCP1_STRLI|2e-05|29.5|139/141| BL:SWS:REP 121->323|GLXA_RHIME|2e-14|27.2|202/324| SEG 83->97|stsrsesepetrrer| BL:PDB:NREP 1 BL:PDB:REP 216->323|1ti9A|3e-09|28.7|108/129| RP:PDB:NREP 2 RP:PDB:REP 99->211|3bhnA|7e-15|18.3|109/208| RP:PDB:REP 223->323|1bl0A|5e-21|28.7|101/116| RP:PFM:NREP 2 RP:PFM:REP 100->183|PF01965|8e-08|40.7|81/135|DJ-1_PfpI| RP:PFM:REP 285->323|PF00165|4e-04|38.5|39/40|HTH_AraC| HM:PFM:NREP 3 HM:PFM:REP 238->273|PF00165|8.6e-10|30.6|36/42|HTH_AraC| HM:PFM:REP 287->314|PF00165|0.00011|25.9|27/42|HTH_AraC| HM:PFM:REP 93->186|PF01965|1.4e-09|24.7|93/148|DJ-1_PfpI| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 2 RP:SCP:REP 14->201|1j42A|3e-12|16.9|172/185|c.23.16.2| RP:SCP:REP 222->323|1v4aA1|9e-18|13.7|102/151|a.24.16.4| HM:SCP:REP 7->202|1pe0A_|4e-32|32.8|183/187|c.23.16.2|1/1|Class I glutamine amidotransferase-like| HM:SCP:REP 222->273|1d5yA1|3.8e-10|32.7|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 276->323|1bl0A2|1.7e-08|31.2|48/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 1074 OP:NHOMOORG 289 OP:PATTERN ------------------------------1------------------------------------- 11--A--1--1---511----6--18-----143337585-3-632------211-----421-5-ABB7--------------------------1----1---B23-7-----------------------------11---1-1--1----------------2------------------------------------------1---------111--1------27--------------------------------------------------------------------------------2----------2---------------------1-----1------------1---1---2--7223-----23364---21-211111111-114-54245537682-8664539CB88952-132463133336--------3---1--1-------------------------------11--12125BFFFGC76775CCFH88893AIBB5B53--3351-31-311273171--1141-------1---3--2---1--1-1--1-1-2---2------24-----------------------------1-11123141-11111--1311-2122-12------2-------242-31-22--------2--1----1-2--------3531133-----------------3-------1-2--------------1----------2545---11--1111-------1--2-12-167774ADG8897A2645-------------------121122111-11-----------11----------------------------------------------------- -----------------1---1----1-----------------------------------------------------------------------------------------------------------------------------------------------------------------2--1--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 313 STR:RPRED 95.7 SQ:SECSTR ##########EEEEEcTTccHHHHHHHHHHHHHTTcEEEEEEcEEEEEETTcccEcTTccEEcccEEHHHHHTTccccEEEccHEcccHHHHHHHHHccHHHHHccccTTTcEEEEETTHHHHHHHTTTTTTcEEcccGGGHHHHHHTcEEccEEccccEEEEccccEEEccHHHHHHHHHHHHHTTcTTccEEEEEEccHHHHHTTTTcGGGccTTccTTcHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHH#### DISOP:02AL 1-6, 8-10, 326-327| PSIPRED cccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEcccEEEEccccccccccccEEEEEcccccccccccHHHcccHHHHHHHHHHHHcccEEEEcHHHHHHHHHHccccccEEEEcHHHHHHHHHHccccEEccccEEEEcccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHccc //