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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86094.1
DDBJ      :             transcriptional regulator, TetR family
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  94/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:192 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->192 2g7sA PDBj e-102 100.0 %
:RPS:PDB   9->177 3br5E PDBj 3e-20 14.5 %
:RPS:SCOP  3->76 2g7sA1  a.4.1.9 * 3e-15 100.0 %
:RPS:SCOP  77->192 2g7sA2  a.121.1.1 * 2e-15 97.4 %
:HMM:SCOP  3->76 2g7sA1 a.4.1.9 * 1.2e-13 25.7 %
:HMM:SCOP  77->192 2g7sA2 a.121.1.1 * 1.1e-27 40.5 %
:HMM:PFM   11->54 PF00440 * TetR_N 1.8e-12 31.8 44/47  
:BLT:SWISS 11->192 YVKB_BACSU 3e-07 26.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86094.1 GT:GENE AAK86094.1 GT:PRODUCT transcriptional regulator, TetR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 273790..274368 GB:FROM 273790 GB:TO 274368 GB:DIRECTION + GB:PRODUCT transcriptional regulator, TetR family GB:PROTEIN_ID AAK86094.1 GB:DB_XREF GI:15155173 LENGTH 192 SQ:AASEQ MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGAMLSARAHGDAATFGAITRPMLERITA GT:EXON 1|1-192:0| BL:SWS:NREP 1 BL:SWS:REP 11->192|YVKB_BACSU|3e-07|26.0|169/189| BL:PDB:NREP 1 BL:PDB:REP 3->192|2g7sA|e-102|100.0|187/187| RP:PDB:NREP 1 RP:PDB:REP 9->177|3br5E|3e-20|14.5|166/186| HM:PFM:NREP 1 HM:PFM:REP 11->54|PF00440|1.8e-12|31.8|44/47|TetR_N| RP:SCP:NREP 2 RP:SCP:REP 3->76|2g7sA1|3e-15|100.0|74/74|a.4.1.9| RP:SCP:REP 77->192|2g7sA2|2e-15|97.4|116/116|a.121.1.1| HM:SCP:REP 3->76|2g7sA1|1.2e-13|25.7|74/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 77->192|2g7sA2|1.1e-27|40.5|116/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 129 OP:NHOMOORG 98 OP:PATTERN --------------------------------------------------111--------------- 1------------------------1---------------------------------------------------------------------------1---2--1-------------------------------------2--111-------------------------------1------------------------------------------------1----------------------------------------------------------------------------------------------------------------------1------------------------2--------212----------------------11-11211-1--111-11-122---------------1-----------------------------------------------1--1-111132253321----11-2------2222222----1--1------1--2---1-1--------------1--------------------------------------------------------------2---1-1----1------1------1-----------------------1---------------1---1-------11-----------------------------------------------111111111----1----------------------------------1------111-------------------1----11------------------11--------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 192 STR:RPRED 100.0 SQ:SECSTR cccGGGHHHHHHHHHHHHHHHHTTTcccHHHHHHHTTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHccccHHTTTTHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccTcccHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHTTcc DISOP:02AL 1-5| PSIPRED cccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc //