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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86148.2
DDBJ      :             sigma-54 modulation protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  113/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.204.1
:190 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  1->98 1imuA  d.204.1.1 * 2e-17 15.6 %
:HMM:SCOP  1->109 1imuA_ d.204.1.1 * 1.6e-25 32.7 %
:HMM:PFM   3->97 PF02482 * Ribosomal_S30AE 3.9e-26 33.3 93/94  
:HMM:PFM   77->152 PF07368 * DUF1487 0.00021 16.2 74/215  
:BLT:SWISS 1->190 RP5M_RHIME 1e-77 78.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86148.2 GT:GENE AAK86148.2 GT:PRODUCT sigma-54 modulation protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(324366..324938) GB:FROM 324366 GB:TO 324938 GB:DIRECTION - GB:PRODUCT sigma-54 modulation protein GB:PROTEIN_ID AAK86148.2 GB:DB_XREF GI:159139589 LENGTH 190 SQ:AASEQ MSVRVSGKHMEIGESFRQRIEDNIGLAVTKYFDGGYSGQVTVEKSGSRFAADCKLHLDTGVVLHAAGQANDPQASFDAAAERIEKRLRRYKRKLKDHHSGSNGALPEIAYTVMDAVPDEDHEVPEDYAPTIVAESSKQIKTMSVASAVMALDMTDEPVLLFRSPGKEYLNIVYRRHDGNIGWIDAETIKS GT:EXON 1|1-190:0| BL:SWS:NREP 1 BL:SWS:REP 1->190|RP5M_RHIME|1e-77|78.9|190/190| SEG 85->95|krlrrykrklk| HM:PFM:NREP 2 HM:PFM:REP 3->97|PF02482|3.9e-26|33.3|93/94|Ribosomal_S30AE| HM:PFM:REP 77->152|PF07368|0.00021|16.2|74/215|DUF1487| RP:SCP:NREP 1 RP:SCP:REP 1->98|1imuA|2e-17|15.6|96/107|d.204.1.1| HM:SCP:REP 1->109|1imuA_|1.6e-25|32.7|107/107|d.204.1.1|1/1|Ribosome binding protein Y (YfiA homologue)| OP:NHOMO 113 OP:NHOMOORG 113 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111------------1-1--1-1----------1111-------1111111111111111111111-11111111111-11111111111111111111111111111111111111-1-1-------------111111111-11------1111---------------------------------------------------------------------------------------1111111111111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 91-108,188-191| PSIPRED cEEEEEEEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccEEEEEccccccEEEEEEEccccEEEEEEEcccc //