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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86209.1
DDBJ      :             ABC transporter, substrate binding protein (sugar)
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  286/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:430 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->351 1eljA PDBj 2e-12 28.1 %
:RPS:PDB   29->430 1a7lA PDBj 1e-34 15.7 %
:RPS:SCOP  29->430 1a7lA  c.94.1.1 * 2e-34 16.3 %
:HMM:SCOP  13->430 1eljA_ c.94.1.1 * 1.4e-68 26.3 %
:RPS:PFM   54->338 PF01547 * SBP_bac_1 2e-09 31.2 %
:HMM:PFM   42->340 PF01547 * SBP_bac_1 3.1e-37 25.7 284/314  
:BLT:SWISS 48->430 UGPB_ECOLI 3e-17 26.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86209.1 GT:GENE AAK86209.1 GT:PRODUCT ABC transporter, substrate binding protein (sugar) GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 386926..388218 GB:FROM 386926 GB:TO 388218 GB:DIRECTION + GB:PRODUCT ABC transporter, substrate binding protein (sugar) GB:PROTEIN_ID AAK86209.1 GB:DB_XREF GI:15155308 LENGTH 430 SQ:AASEQ MKLNRRAVMGGLALGMAFAGLAQPVLANEITLNVLYNLPGFTKFHQPLADEFMKKNPDVKINFLAPAAGYNEGQQQVLRSAVTGNLPDVYFSGYNLTAELVHTLAPRNQITDLGPFIQAEGGQAFLDKNYSPKMAALGQIDGKQYGLPVNASSPIIYINSDLVTKAGGDPDKMPTTFPELIALAKKIKALDPKFAGMSYDINGWPDDWLWQALVVEQGGKLVDDKTKTVAFDNEIGLNALKMTRQFVTEGGQNLLDWDQSRQQFGAGLTGFIFSTPAHVQTIQGLVGDRFKLKTATFPLDNKEKGGVPTGGNSAVILTQEKAKQDAAWKYLKWITGPEAQNTIVRITGYLPTNKLATGPDFLAPYYVENPNVKTASLQADRSLPWAGYPGGDSVRIWRTQRDIIGTVMRGEVTPEAGLKQIVEQTNALLK GT:EXON 1|1-430:0| BL:SWS:NREP 1 BL:SWS:REP 48->430|UGPB_ECOLI|3e-17|26.3|369/438| SEG 9->22|mgglalgmafagla| BL:PDB:NREP 1 BL:PDB:REP 39->351|1eljA|2e-12|28.1|278/379| RP:PDB:NREP 1 RP:PDB:REP 29->430|1a7lA|1e-34|15.7|369/380| RP:PFM:NREP 1 RP:PFM:REP 54->338|PF01547|2e-09|31.2|256/282|SBP_bac_1| HM:PFM:NREP 1 HM:PFM:REP 42->340|PF01547|3.1e-37|25.7|284/314|SBP_bac_1| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF01547|IPR006059| GO:PFM GO:0006810|"GO:transport"|PF01547|IPR006059| RP:SCP:NREP 1 RP:SCP:REP 29->430|1a7lA|2e-34|16.3|369/380|c.94.1.1| HM:SCP:REP 13->430|1eljA_|1.4e-68|26.3|372/380|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 450 OP:NHOMOORG 295 OP:PATTERN -------------------1----2112--------------------------11--1--------- ----4---111-1---1--------------------111-433271--1--113--2----111--132-1---2------1-----------------------------------------------------2221-----14--111-1-11--------112111------------44-33-1-32111111111--1111141---11111-3---121221227---------------------1--22--2-1----12---1-1---------------------------------------1---111----111111111-1--2---------111----11----2--111-------------1-11--21----1-11-33332331324---1--1-112--455322165322---------1-1112----------------------------------------------------1111111111111111122111111112-1----111---221--1-1---------------------------------1111--------------1----------2-------------------------------------------------------------1122-1-1111111111-111111111111111111122233--111111111111111111-11111---122222212212----------------1----------------------------------------------------------------------------------------------------------------------------------541125211--- -------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 406 STR:RPRED 94.4 SQ:SECSTR ########################cccccccEEEEccTTccHHHHHHHHHHHHHHTHcccEEEEcccGccTTHHHHHHHHGGGTccccEEEEEGGGHHHHHHTTcHTTccccccccHHHHcccHHHHTTccHHHHGGGEETTEEccEEEEEEccEEEEETTTcHHHTTcccccccccTTHHHHHHHHHTTTccccccccccHHHHHHHHHHTTcEEEcccccccccccEEcccHHHHHHHHHHHHHHHTTccTTccHHHHHHHHHTTcccEEEEcGGGHHHHHHTTHHTccEEEEcccccTTcccccEEEEEEEEEcTTcTTTHHHHHHHHHHTTccHHHHHHHHHHccccEEccHcGcHHHHHHHTTcHHHHHHHHHHHHcEEccccTcTTHHHHHHHHHHHHHHHHTTcccHHHHHHHHHccHHHHcc DISOP:02AL 1-3| PSIPRED cccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHccccEEEEEEEEEccEEEEEEHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcccccccccccEEccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccEEEEEccHHHHHHHHHHccccccEEEEEEEccccccccEEEEEEEEEEEEcccccHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHccHHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcc //