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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86477.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  316/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.160.1
:258 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   181->257 1y7mA PDBj 4e-09 39.5 %
:RPS:SCOP  123->257 1zatA1  b.160.1.1 * 1e-29 24.8 %
:HMM:SCOP  118->259 1y7mA1 b.160.1.1 * 5.4e-36 40.0 %
:RPS:PFM   125->256 PF03734 * YkuD 3e-09 40.3 %
:HMM:PFM   126->257 PF03734 * YkuD 3.4e-23 34.5 110/116  
:BLT:SWISS 28->110 SP130_CHICK 3e-04 27.7 %
:BLT:SWISS 112->258 ERFK_ECOLI 5e-24 41.7 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86477.2 GT:GENE AAK86477.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(665308..666084) GB:FROM 665308 GB:TO 666084 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK86477.2 GB:DB_XREF GI:159139727 LENGTH 258 SQ:AASEQ MPMKSVFLALSLVSTLAVPAAMANERYRERPPVVVSPDLSAPWVTQLGGRSNVRPVVYPRAPAARQPLFQQRQVAMPQRPSSGVTSQRPARVQNAAVRPNAPMRTQIAPQFLPQIVSYQTAEKPGTIVIDTPNRFLYLVLADGKARRYGVGVGKPGFEWAGTHKVTRKAEWPSWTPPKEMISREATKGHYLPAFMEGGPANPMGARAMYLGSTLYRIHGTNQPWTIGSNNSSGCIRMRNEDVTDLYERVNVGTRVIVI GT:EXON 1|1-258:0| BL:SWS:NREP 2 BL:SWS:REP 28->110|SP130_CHICK|3e-04|27.7|83/1057| BL:SWS:REP 112->258|ERFK_ECOLI|5e-24|41.7|144/310| TM:NTM 1 TM:REGION 1->22| BL:PDB:NREP 1 BL:PDB:REP 181->257|1y7mA|4e-09|39.5|76/161| RP:PFM:NREP 1 RP:PFM:REP 125->256|PF03734|3e-09|40.3|124/136|YkuD| HM:PFM:NREP 1 HM:PFM:REP 126->257|PF03734|3.4e-23|34.5|110/116|YkuD| RP:SCP:NREP 1 RP:SCP:REP 123->257|1zatA1|1e-29|24.8|117/126|b.160.1.1| HM:SCP:REP 118->259|1y7mA1|5.4e-36|40.0|115/0|b.160.1.1|1/1|L,D-transpeptidase catalytic domain-like| OP:NHOMO 882 OP:NHOMOORG 317 OP:PATTERN -------------------------------------------------------------------- -11----------------------------------------------------------------------------------122----------------------------------------------------------2111--1--1111-321----1112--------------------1-111111122222222221---12221111----------2--------------------------------------------------------------------------------------------1--111--------111-----11--1---111111-1--1-------11-----1111168B9966788A9855554454548-ADAAE89A78--677598A9898867---A146566323------------------------------------------------------------------------------------------------------------211-----11-------------1-----22212121222-2--21-------------------------22331-1-1---111111111111111111111-11111------43222314444444444-444444444444444444444422111443444444443434424344443111-1-11111111-1--1111111112-11--------------------------1-11111111111111111-------------11111111111----------------1---------------------------------------------11111111--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 76 STR:RPRED 29.5 SQ:SECSTR ####################################################################################################################################################################################TTcccccEEEEEEEEEEcccGGGTTEEEEEccTTcEEEccccGGGTTcEEEcccEE#cHHHHHHHHHHccTTcEEEE# DISOP:02AL 1-3| PSIPRED ccHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHcEEEEcccccccEEEEEEHHHcEEEEEEccEEEEEEEccccccccccccEEEEEEEEEcccccccHHHHEEccccccccccccccccccccccEEEEEcccEEEEEEcccccccccccccccEEccHHHHHHHHHHcccccEEEEc //