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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86481.2
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  717/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:305 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->168 3hhgG PDBj 3e-14 25.3 %
:RPS:PDB   1->211 1b9nB PDBj 2e-23 9.9 %
:RPS:SCOP  1->104 1b9mA1  a.4.5.8 * 1e-19 14.4 %
:RPS:SCOP  91->296 1ixcA2  c.94.1.1 * 2e-22 16.3 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 5e-25 41.9 %
:HMM:SCOP  82->303 1uthA_ c.94.1.1 * 4.9e-36 27.0 %
:RPS:PFM   5->61 PF00126 * HTH_1 4e-08 54.4 %
:RPS:PFM   90->232 PF03466 * LysR_substrate 2e-17 36.0 %
:HMM:PFM   88->293 PF03466 * LysR_substrate 2.6e-43 28.7 202/209  
:HMM:PFM   3->62 PF00126 * HTH_1 1e-21 51.7 60/60  
:BLT:SWISS 1->231 CYSL_BACSU 2e-32 33.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86481.2 GT:GENE AAK86481.2 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 668543..669460 GB:FROM 668543 GB:TO 669460 GB:DIRECTION + GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID AAK86481.2 GB:DB_XREF GI:159139730 LENGTH 305 SQ:AASEQ MTFEQLRIFIAVAEREHLTRAAEAIGLTASAVSSAIKNLEAFYNVELFHRVGRNIELTESGRAFLGEAKATLARVRNAELILSEMGGLTRGEITVCASQTIASYWLPPILMQFKKLYPGVTVRLDIGNTKTVTQAVLDGLAEVGFIEGKIDEPALMVQPVVSDKLLVVTGSAHPFADGRYLTALDMLYGTSWVLREQGSGTRSAFEAAVRQMGVDPAELSVMLELPSNEAVVMAARSGGAATAVSASVASLFLRQGLLVRAGIDLPARNFALLRHKERHTSRAAMELERLSRAASEDYKAGLAGL GT:EXON 1|1-305:0| BL:SWS:NREP 1 BL:SWS:REP 1->231|CYSL_BACSU|2e-32|33.9|227/299| SEG 234->250|aarsggaatavsasvas| BL:PDB:NREP 1 BL:PDB:REP 4->168|3hhgG|3e-14|25.3|162/294| RP:PDB:NREP 1 RP:PDB:REP 1->211|1b9nB|2e-23|9.9|202/245| RP:PFM:NREP 2 RP:PFM:REP 5->61|PF00126|4e-08|54.4|57/60|HTH_1| RP:PFM:REP 90->232|PF03466|2e-17|36.0|139/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 88->293|PF03466|2.6e-43|28.7|202/209|LysR_substrate| HM:PFM:REP 3->62|PF00126|1e-21|51.7|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->104|1b9mA1|1e-19|14.4|104/122|a.4.5.8| RP:SCP:REP 91->296|1ixcA2|2e-22|16.3|203/205|c.94.1.1| HM:SCP:REP 1->112|1b9mA1|5e-25|41.9|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 82->303|1uthA_|4.9e-36|27.0|215/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 8156 OP:NHOMOORG 738 OP:PATTERN ----------1--1---------1-----------11111111----------1-------------- 4542B22255622184511-13113B11111333336EQQ-648612211114653-3--233-53HDCA3-------11564211112221-1-----11611141213---------------1---1----1-45534---21643744534331111113537866211111111111112211---43FCCCCCCCC4BABBDB84CAEGCBD244C442766776OX12244443443324444557222433313-3551133233212---111-----11--------------------1------------2-55BC66666764653755422293111745229B552212631121--2322D66511111D4NKO7778F7A7BBBAB9C9ACP-CDGABXDJDV51pVVKKQKdbOWRPO5749IMC5ADBGICBCCCCCC8CBC966A-----------------------------12AI33IpfMs******VRSTPvv**XWXYHW*j*m*zs12fYRDFIGExKfBuNBLC8538IA33555355346EF72314342157443-414334332674689133-11-1111-1---------13122DCGAG9B7Q7B99GDEEC4DDGDDBGGFFCOI1--444A------KFIG8KGIKLKIKHIJJ-KJHINIGKKIKJMJJHKJEfpbGK8E9KBKGKJLKJJHGJGGFTEECCCDF3-F56566566766---611111566636LGX666648244444554HHIIKAK576W8ggjgbukrOinjg9UUW3422234244BGHPHGHHGINLHHHKCGFGG67511111-4111------------1-------------------------------------361 -------------1------------------------------------------------------------------------------------------------------------------------------------------------7----1------8--2-1--------1---9-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 298 STR:RPRED 97.7 SQ:SECSTR EcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHTTTTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEGGGcEEEccHHHHTTccEEEEEEEEEEEEccccEEEEEEEcTTccEEEEEEEGGGcTTTccTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGccTTTcTTcEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTcTTc####### DISOP:02AL 84-88,304-306| PSIPRED ccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEccccccccEEEEEEEcccEEEEEccccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHccccEEEEEHHHHHHHHcccEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccc //