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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86552.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  83/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1b.82.1
:264 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->74 3f52E PDBj 4e-05 36.8 %
:RPS:PDB   8->62 2axuC PDBj 4e-12 34.0 %
:RPS:SCOP  1->62 1y7yA1  a.35.1.3 * 2e-11 29.0 %
:RPS:SCOP  40->117 2pytA1  b.82.1.24 * 2e-04 11.5 %
:HMM:SCOP  2->63 1x57A1 a.35.1.12 * 9e-12 33.9 %
:RPS:PFM   12->61 PF01381 * HTH_3 3e-05 42.0 %
:HMM:PFM   12->59 PF01381 * HTH_3 8.8e-11 43.8 48/55  
:HMM:PFM   97->165 PF00989 * PAS 9e-05 22.1 68/113  
:BLT:SWISS 5->73 Y023_MYCTU 1e-05 31.9 %
:BLT:SWISS 81->210 RPOB_SHEDO 4e-04 26.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86552.2 GT:GENE AAK86552.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(741430..742224) GB:FROM 741430 GB:TO 742224 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK86552.2 GB:DB_XREF GI:159139759 LENGTH 264 SQ:AASEQ MTHHREHVGQVLKEWRARRRLSQLDLAIEADISARHLSFVESGRSSPSREMLAKLAEQLSMPARAANRLMLAAGYAPVHSERSLDAPDMAAARQAVETVVHGHMPFPALAVDRHWNVVLANDAITSLLAGVSAELLQSPLNALRLSLHPDGLSSRIVNLAEWRHHLLERLKRQVEETGDDVLSRVYAELASYPAPKLSAHADGADPLAIPLQLRDPSSGATLSFISTTTVFGTATDVTLSELVLECFYPADAATRAALMQGTQE GT:EXON 1|1-264:0| BL:SWS:NREP 2 BL:SWS:REP 5->73|Y023_MYCTU|1e-05|31.9|69/256| BL:SWS:REP 81->210|RPOB_SHEDO|4e-04|26.2|126/1343| SEG 227->238|tttvfgtatdvt| BL:PDB:NREP 1 BL:PDB:REP 5->74|3f52E|4e-05|36.8|68/78| RP:PDB:NREP 1 RP:PDB:REP 8->62|2axuC|4e-12|34.0|53/295| RP:PFM:NREP 1 RP:PFM:REP 12->61|PF01381|3e-05|42.0|50/55|HTH_3| HM:PFM:NREP 2 HM:PFM:REP 12->59|PF01381|8.8e-11|43.8|48/55|HTH_3| HM:PFM:REP 97->165|PF00989|9e-05|22.1|68/113|PAS| GO:PFM:NREP 1 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| RP:SCP:NREP 2 RP:SCP:REP 1->62|1y7yA1|2e-11|29.0|62/69|a.35.1.3| RP:SCP:REP 40->117|2pytA1|2e-04|11.5|78/128|b.82.1.24| HM:SCP:REP 2->63|1x57A1|9e-12|33.9|62/0|a.35.1.12|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 98 OP:NHOMOORG 83 OP:PATTERN -------------------------------------------------------------------- ----2----------------1---1------1111112--213-2--------------11--1-1112--------------------------------------------------------------------------1-1---------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------211---1-111----------1----------11-211----11211---1---------11-------------------------------------------------2------111111-----1121------2121111--11---1111-1-1--------------------------------1---------------2--11--------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------1-11111------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 78 STR:RPRED 29.5 SQ:SECSTR cccHHccHHHHHHHHHHHTTccHHHHHHTTTTcHHHHHHHTTTcccccHHHHHHHHHHHTccHHHHHHTTcccccccc########################################################################################################################################################################################## DISOP:02AL 1-4,80-90,263-265| PSIPRED ccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHccccHHHcccccEEEEEEcccHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccEEEccccccHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHcc //