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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86593.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  622/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
c.1.33d.110.3d.243.1d.58.29
:971 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   410->525 3eehA PDBj 3e-07 25.4 %
:BLT:PDB   541->702 3iclA PDBj 3e-16 32.1 %
:BLT:PDB   710->960 3ii8B PDBj 3e-46 45.1 %
:RPS:PDB   402->509 1d7eA PDBj 5e-05 8.5 %
:RPS:PDB   482->720 2a8mB PDBj 4e-36 10.9 %
:RPS:PDB   716->966 2basA PDBj 5e-57 17.3 %
:RPS:SCOP  456->534 1tfoA1  d.243.1.1 * 5e-19 11.4 %
:RPS:SCOP  543->702 1w25A3  d.58.29.2 * 3e-29 26.6 %
:RPS:SCOP  718->965 2basA1  c.1.33.1 * 7e-62 17.7 %
:HMM:SCOP  415->528 1p97A_ d.110.3.7 * 1.6e-18 28.8 %
:HMM:SCOP  543->703 1w25A3 d.58.29.2 * 3.6e-46 41.5 %
:HMM:SCOP  715->963 2basA1 c.1.33.1 * 1.2e-76 42.6 %
:RPS:PFM   433->521 PF08447 * PAS_3 2e-12 35.2 %
:RPS:PFM   540->695 PF00990 * GGDEF 8e-25 38.7 %
:RPS:PFM   716->950 PF00563 * EAL 8e-52 41.6 %
:HMM:PFM   716->950 PF00563 * EAL 1.9e-66 41.0 229/236  
:HMM:PFM   539->696 PF00990 * GGDEF 8e-41 35.7 157/161  
:HMM:PFM   436->521 PF08447 * PAS_3 1.4e-18 32.9 85/91  
:HMM:PFM   50->183 PF07696 * 7TMR-DISMED2 3.7e-16 25.0 132/141  
:HMM:PFM   195->388 PF07695 * 7TMR-DISM_7TM 5.3e-07 20.0 190/205  
:BLT:SWISS 438->963 Y4LL_RHISN 1e-79 34.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86593.1 GT:GENE AAK86593.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(779594..782509) GB:FROM 779594 GB:TO 782509 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK86593.1 GB:DB_XREF GI:15155761 LENGTH 971 SQ:AASEQ MTYNHTAPCLSKRLAAIALAVPFFLLFVLFASHSYAFEPVKISRDDTALDLTATTDIYANQGEAFQVSTAPGPDGIRRRIEVRASSEDHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWPDLGSQRIIAITPSEGFALDRQPSPDADVFRITLNPGSVITFVAELSTPQLPQIYLWEPEAYKDTINAFTLYRGIVLGIAGLLAVLLTILFVVKGTSVLPASAALAWAVLAYICVDFGFLEKLITVTSSDQRIWRAGAEVALASSFVVFLFTYLNLNRWHAHLGYATFAWVVGLALLFGVAIYDPSVASGIARVSFALTATAGIALIIYLGFNRYDRAILLVPSWALILVWLFGSWLTVTGQLDNDIVQPALGGGLVLIVLLIGFTVIQHAFAGSAYQQGLFSDLERQSLALTGSGDTVWDWDVTRDRIVTTPDISNRLGLEPGTMHGAARNWLPRLHPDDRDRFKATLDVLLDHRKGRLNHEFRIRAEDGHFHWLQIRARPVLGSNGEIIRCVGTITDITEQKNSVERLLQDAMNDNLTGLPNRQVFLDRLQSILNLSPDSEGVRPTVMAIDIDRYKLVNDTLGIAAGDNILIALTRRLRRLLKPQDTLARLGGDEFGLILTSERDPQRVADFADAVNKAIMVPINFANREIILTASIGLVSWIDQQESAAGLLSDAELAMYRAKRAGGNRVEPFRPAFRTSGTDRLQMESDLRRAIERKELSLAYQPIVKLDDGALAGFEALMRWEHPKRGNIPPSEFIPIAEASGLIEPLGMFALERAATDLMDWQHAIDKMPIFISVNISSAQLLNNELYNDVRGMLTRTRCNPQQLKLELTESVVMENPEQARLVLSKLKETGLSLAMDDFGTGYSSLAYLTRFPFDTIKLDKALVANTSDKRNVLLRSVIAMARALDMQVVAEGIETPEDAAELARMNCHFGQSFMFGTPVSGDAALKLLRERFQPTKRAS GT:EXON 1|1-971:0| BL:SWS:NREP 1 BL:SWS:REP 438->963|Y4LL_RHISN|1e-79|34.2|517/827| TM:NTM 8 TM:REGION 14->36| TM:REGION 195->217| TM:REGION 228->250| TM:REGION 259->280| TM:REGION 286->308| TM:REGION 313->335| TM:REGION 342->364| TM:REGION 376->398| SEG 14->31|laaialavpffllfvlfa| SEG 45->56|ddtaldltattd| SEG 198->217|givlgiagllavlltilfvv| SEG 221->235|svlpasaalawavla| SEG 321->335|altatagialiiylg| SEG 376->388|lggglvlivllig| SEG 600->608|ltrrlrrll| BL:PDB:NREP 3 BL:PDB:REP 410->525|3eehA|3e-07|25.4|114/116| BL:PDB:REP 541->702|3iclA|3e-16|32.1|159/159| BL:PDB:REP 710->960|3ii8B|3e-46|45.1|244/256| RP:PDB:NREP 3 RP:PDB:REP 402->509|1d7eA|5e-05|8.5|106/119| RP:PDB:REP 482->720|2a8mB|4e-36|10.9|238/313| RP:PDB:REP 716->966|2basA|5e-57|17.3|243/393| RP:PFM:NREP 3 RP:PFM:REP 433->521|PF08447|2e-12|35.2|88/90|PAS_3| RP:PFM:REP 540->695|PF00990|8e-25|38.7|155/160|GGDEF| RP:PFM:REP 716->950|PF00563|8e-52|41.6|233/236|EAL| HM:PFM:NREP 5 HM:PFM:REP 716->950|PF00563|1.9e-66|41.0|229/236|EAL| HM:PFM:REP 539->696|PF00990|8e-41|35.7|157/161|GGDEF| HM:PFM:REP 436->521|PF08447|1.4e-18|32.9|85/91|PAS_3| HM:PFM:REP 50->183|PF07696|3.7e-16|25.0|132/141|7TMR-DISMED2| HM:PFM:REP 195->388|PF07695|5.3e-07|20.0|190/205|7TMR-DISM_7TM| RP:SCP:NREP 3 RP:SCP:REP 456->534|1tfoA1|5e-19|11.4|79/103|d.243.1.1| RP:SCP:REP 543->702|1w25A3|3e-29|26.6|158/162|d.58.29.2| RP:SCP:REP 718->965|2basA1|7e-62|17.7|243/257|c.1.33.1| HM:SCP:REP 415->528|1p97A_|1.6e-18|28.8|111/0|d.110.3.7|1/1|PYP-like sensor domain (PAS domain)| HM:SCP:REP 543->703|1w25A3|3.6e-46|41.5|159/0|d.58.29.2|1/1|Nucleotide cyclase| HM:SCP:REP 715->963|2basA1|1.2e-76|42.6|244/0|c.1.33.1|1/1|EAL domain-like| OP:NHOMO 9239 OP:NHOMOORG 638 OP:PATTERN ------------------------3----123-----------11-14-1------------------ G3369---111----3322-2G44-122222-B5656C64DFEZp-------548-----B73-E4G4442----1----G27AFJ59-------------1----2121---------------1122111221-8995622286lTRWMN233FF---3--DJ72KJN3------------I372-54189-777775672777777-23323777463E1NL454554DF--------------------------3---------------------------------------------------------------5D86J44444447383R875576836--5896AEBF75847763244---92A8AA71111147bTTC9EVQKRU5677577576E-WTOTOCRVAQ61LPPMVXQWYZIHRDCEC4C1CE9A9B6--------FDD5-mCW11111---22222222222222212111--8AGB5FBA32KHIKKJF8887HHXiBBBB79NUWCRHZ-1PPKXIXNPU13m76QSSPObeYN-------98HQnp3GKECKLOBYSLJM-HCHbDJBUO4445A655G764----------------XKKVH43UQHakapQgVppklklcpYnkkckkaZbqt---FYFf------KMID5RDPNMMPLOOOM-LONQPJJNNOMNMMOONOOOQLJJ--1F9CEFGFFFFFFGEEFEEBA99EH1-G56676645676---R-1-1-ILJLE8pGf---------------7777727-1-FWVUZSWgdaeaXXZTUWW-----2---XERQJTTTTRYcUigKNONQNMIIL3333--e-CC86FG1111111-519-------------------------6614227223-5- --------------------------------------------------------------------------------------------------------------------------------------------------------------3----5---------A3----------3--B-----7---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 570 STR:RPRED 58.7 SQ:SECSTR #################################################################################################################################################################################################################################################################################################################################################################################################################HHHHHHTTcTTcccEEcTTEEEEEEcTTccEEEEEGGGTTTTcccccTTcccGccccccTccccEEEEEccccccccccccEEEEEEEEEcTTccEEEEEEcccGGGTcccHHHHHHHHHTcccHHHTTcHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEccGGGcccGGGGEEEcccccccccHHHHHHcTTTHHHHHHHHHHHHccEEEEEcccHHHHccHHTTGGGcHHHTcccccccEcGGGGGGccccHHHHHHHHHHHHHHHTccccEEcccccccGGGccHHHHHcHHHHHHTTTTEEEEEEEEEEcccccEEEEEEEEEEEETTEEEEcHHHHccccccHHHHHHHHHHHHHHHHHHHTTccTGTTTcTcEEEEccHHHHGGTTHHHHHHHHHHHHTTccGGGEEEEEccTTccccHHHHHHHHHHHHTTTcEEEEEEETTTcccHHHHHHHcccEEEEEcTTTcccHHHHHHHHHHHHHHHHHHTcEEEEEccccHHHHHHHHHTTEEEEccTTTcccccccccTTTTHHHHHHHHHHH DISOP:02AL 1-3, 85-87, 400-406, 967-971| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEEccccccccEEEEEEccccHHHHcEEEEcccEEEccccEEccccccccEEEEcccccccccccccccccEEEEEEccccEEEEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEcHHHHHHHcccHHHHccccHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHccEEEccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEEEEEEccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHccccHHHHHHHHHHHcccccccEEEEEEHHHHHccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEEcHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccEEEHHHccccccHHHHHHHHHHccccccccc //