[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86629.1
DDBJ      :             ABC transporter, membrane spanning protein
Swiss-Prot:             

Homologs  Archaea  52/68 : Bacteria  636/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:290 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   94->230 3d31C PDBj 2e-20 36.0 %
:RPS:PDB   183->214 3dhwA PDBj 1e-08 31.2 %
:RPS:SCOP  58->242 2r6gF2  f.58.1.1 * 1e-24 20.5 %
:RPS:PFM   110->231 PF00528 * BPD_transp_1 8e-08 30.8 %
:HMM:PFM   86->280 PF00528 * BPD_transp_1 2e-15 22.6 177/185  
:HMM:PFM   26->46 PF06103 * DUF948 0.00072 42.9 21/90  
:BLT:SWISS 49->252 CYSW_ECOLI 7e-67 55.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86629.1 GT:GENE AAK86629.1 GT:PRODUCT ABC transporter, membrane spanning protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 820238..821110 GB:FROM 820238 GB:TO 821110 GB:DIRECTION + GB:PRODUCT ABC transporter, membrane spanning protein GB:PROTEIN_ID AAK86629.1 GB:DB_XREF GI:15155805 LENGTH 290 SQ:AASEQ MSETASRTSPRPFRDPASESLPARLALIAVAFLFLAAFLVLPLVSVFFEAFRKGADSFWDAIVEPDALSAIRLTLLVAAISVPLNVVFGVAAAWAIAKFEFKGKAFLITLIDLPFSISPVISGLVYVILFSAHSVLGPWLKSYGIEILFAVPGIVLATIFVTFPFVARELIPLMQDQGNGDEEAAISLGASGWQTFWYVTLPNIKWGLLYGVLLCNARAMGEFGAVSVVSGHIRGETNTMPLHVEILYNEYNIGASFAVATLLAGLALVTLVLKTILEIRFGAGNAAGKH GT:EXON 1|1-290:0| BL:SWS:NREP 1 BL:SWS:REP 49->252|CYSW_ECOLI|7e-67|55.4|204/291| TM:NTM 6 TM:REGION 26->48| TM:REGION 73->95| TM:REGION 109->131| TM:REGION 148->170| TM:REGION 190->212| TM:REGION 254->276| SEG 25->48|laliavaflflaaflvlplvsvff| SEG 258->275|avatllaglalvtlvlkt| BL:PDB:NREP 1 BL:PDB:REP 94->230|3d31C|2e-20|36.0|136/248| RP:PDB:NREP 1 RP:PDB:REP 183->214|3dhwA|1e-08|31.2|32/203| RP:PFM:NREP 1 RP:PFM:REP 110->231|PF00528|8e-08|30.8|120/195|BPD_transp_1| HM:PFM:NREP 2 HM:PFM:REP 86->280|PF00528|2e-15|22.6|177/185|BPD_transp_1| HM:PFM:REP 26->46|PF06103|0.00072|42.9|21/90|DUF948| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 58->242|2r6gF2|1e-24|20.5|185/244|f.58.1.1| OP:NHOMO 2047 OP:NHOMOORG 695 OP:PATTERN ---12111111111111----1-1123121221-2212555531314411533-2423312---1--- --1-1-112231--33333-33--3433333334444344111-2221312-2131-2--11212122211--------111411111----1------------1-1-----------------1212212322211122--14214433332255------33235551------------21111-1-4-143424554444453444221144614342-2----1-66111111111111111111111---------1----------------------1-------------111111-111111---111-----22-455544541421444--2-3-21132361442121-2-1---1--211-3333-----335643353455555555555557-44233444443-599354675557771--137778744122222222-33-2533-------------------------------11--256223446432233333564444339564444-25553322343B5556871333593444434222243-35243221-5221-53213335-3-224213312111111-1-1111111113311113332421-1-114444112444516215112---32-------44331454444444444-4444444444444334434545673334544444444444444444434442-56655666665622-1---------4-41622232412211111444434233443533336464656553444---------11111555554414222333333332222--12332222--------1----------------------------321--1111-4- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------222-----12---1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 175 STR:RPRED 60.3 SQ:SECSTR #######################################################HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccTTHHHHHHHHHGGGTccHHHHHHHHHHHHcTTcTTTGGGTTTccccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHHHTccHHHHHHH############################################################ DISOP:02AL 1-21, 281-290| PSIPRED cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc //