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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86659.1
DDBJ      :             transcriptional regulator, MarR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  84/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:148 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->116 1lj9B PDBj 9e-07 29.9 %
:RPS:PDB   40->147 3bpxB PDBj 2e-13 19.4 %
:RPS:SCOP  40->133 2fbiA1  a.4.5.28 * 1e-20 25.5 %
:HMM:SCOP  13->150 1jgsA_ a.4.5.28 * 1.1e-28 33.6 %
:RPS:PFM   44->100 PF01047 * MarR 4e-04 35.1 %
:HMM:PFM   44->101 PF01047 * MarR 2.9e-12 32.8 58/59  
:BLT:SWISS 74->145 HOSA_ECO11 8e-08 40.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86659.1 GT:GENE AAK86659.1 GT:PRODUCT transcriptional regulator, MarR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(852964..853410) GB:FROM 852964 GB:TO 853410 GB:DIRECTION - GB:PRODUCT transcriptional regulator, MarR family GB:PROTEIN_ID AAK86659.1 GB:DB_XREF GI:15155841 LENGTH 148 SQ:AASEQ MSNAGVIPFSTTLLVRDSCLCLHAQRAARALARLFDNALKPAGITNGQFSLLISLNRPEPPPMGPVANLLAMDRTTLTAALKPLERRGLVRIEPDPKDKRGKRLRLTPEGMAVLAVAFPIWEQTHAEVETKIGSGDPGRLRRDLIDLG GT:EXON 1|1-148:0| BL:SWS:NREP 1 BL:SWS:REP 74->145|HOSA_ECO11|8e-08|40.8|71/135| SEG 20->39|lclhaqraaralarlfdnal| BL:PDB:NREP 1 BL:PDB:REP 40->116|1lj9B|9e-07|29.9|77/142| RP:PDB:NREP 1 RP:PDB:REP 40->147|3bpxB|2e-13|19.4|108/138| RP:PFM:NREP 1 RP:PFM:REP 44->100|PF01047|4e-04|35.1|57/59|MarR| HM:PFM:NREP 1 HM:PFM:REP 44->101|PF01047|2.9e-12|32.8|58/59|MarR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01047|IPR000835| GO:PFM GO:0005622|"GO:intracellular"|PF01047|IPR000835| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01047|IPR000835| RP:SCP:NREP 1 RP:SCP:REP 40->133|2fbiA1|1e-20|25.5|94/136|a.4.5.28| HM:SCP:REP 13->150|1jgsA_|1.1e-28|33.6|137/0|a.4.5.28|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 102 OP:NHOMOORG 84 OP:PATTERN -------------------------------------------------------------------- -----------------11-1-----11111-----------------------------------------------------------------------------------------------------------------1----1-------------------1---------------------------------------------------1---------------------------------------------------------------------------------------------------------1------------------------------1-----------------2--------31-1-11-1----11111111111-11-1-1-1-21-122-1111111111-1---11111---------------------------------------------------1-------212222-----2222------222--------1-----1------1------------------------------------------------11-1---------------------------------1------------------------------------------------------------------------------------------------------------------------------------1---------------------------------1------11-1----------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 109 STR:RPRED 73.6 SQ:SECSTR #######################################GGGTccHHHHHHHHHHHHcTTccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEETTEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHTTTccHHHHHHHHHHHHHHH DISOP:02AL 1-6| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHcccEEcccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcc //