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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86752.2
DDBJ      :             transcriptional regulator, AsnC family
Swiss-Prot:             

Homologs  Archaea  35/68 : Bacteria  323/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.58.4
:143 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->122 2vbwA PDBj 5e-15 35.5 %
:RPS:PDB   5->129 2e1cA PDBj 1e-19 22.4 %
:RPS:SCOP  5->56 1i1gA1  a.4.5.32 * 6e-14 40.4 %
:RPS:SCOP  65->129 1ri7A2  d.58.4.2 * 2e-12 21.5 %
:HMM:SCOP  1->63 2cg4A1 a.4.5.32 * 3.9e-14 39.7 %
:HMM:SCOP  64->143 2cg4A2 d.58.4.2 * 9.9e-15 32.5 %
:RPS:PFM   14->49 PF09012 * FeoC 5e-04 47.2 %
:HMM:PFM   69->139 PF01037 * AsnC_trans_reg 3.4e-18 31.0 71/74  
:HMM:PFM   8->48 PF08279 * HTH_11 7.2e-10 36.6 41/55  
:BLT:SWISS 3->128 REG7_PYRHO 5e-15 34.1 %
:PROS 21->47|PS00519|HTH_ASNC_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86752.2 GT:GENE AAK86752.2 GT:PRODUCT transcriptional regulator, AsnC family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 936462..936893 GB:FROM 936462 GB:TO 936893 GB:DIRECTION + GB:PRODUCT transcriptional regulator, AsnC family GB:PROTEIN_ID AAK86752.2 GB:DB_XREF GI:159139852 LENGTH 143 SQ:AASEQ MAIADKDRALLALLSENARMPVAELARKLGLSRTTVQARIERLEADGVIAGYGLRLSESYLSGLVRAHVLITIGPKALPAVTAALTAIKEVTTLHSVSGTFDLIAILAAPSILDLDRLIDRIGALDGVERTLSSIILSTRISR GT:EXON 1|1-143:0| BL:SWS:NREP 1 BL:SWS:REP 3->128|REG7_PYRHO|5e-15|34.1|126/141| PROS 21->47|PS00519|HTH_ASNC_1|PDOC00520| TM:NTM 2 TM:REGION 65->87| TM:REGION 98->120| SEG 130->142|rtlssiilstris| BL:PDB:NREP 1 BL:PDB:REP 2->122|2vbwA|5e-15|35.5|121/147| RP:PDB:NREP 1 RP:PDB:REP 5->129|2e1cA|1e-19|22.4|125/147| RP:PFM:NREP 1 RP:PFM:REP 14->49|PF09012|5e-04|47.2|36/71|FeoC| HM:PFM:NREP 2 HM:PFM:REP 69->139|PF01037|3.4e-18|31.0|71/74|AsnC_trans_reg| HM:PFM:REP 8->48|PF08279|7.2e-10|36.6|41/55|HTH_11| RP:SCP:NREP 2 RP:SCP:REP 5->56|1i1gA1|6e-14|40.4|52/60|a.4.5.32| RP:SCP:REP 65->129|1ri7A2|2e-12|21.5|65/86|d.58.4.2| HM:SCP:REP 1->63|2cg4A1|3.9e-14|39.7|63/0|a.4.5.32|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 64->143|2cg4A2|9.9e-15|32.5|80/0|d.58.4.2|1/1|Dimeric alpha+beta barrel| OP:NHOMO 799 OP:NHOMOORG 359 OP:PATTERN 11--1121222222222------11-111111----------1---1-------453343411-2--- -1--5------1--5--23-21--1122222111213356-1--221-----23411---541143-353------------------------11-------1-2---------------------------------------1-------------------------------------21----------------------------11----------------1----------------------------------11----------------------------------------------------------11-------------------------1-------------------1--2113--1----111--------33433443448-1111111-26--444233933456111---452222136--------1--1--14-------------------------------1121333237466763322133334444225443433----111323323311-------4------------------11---1-------------------------------------------------12--1-1114-22222211222232-22-2-------------12112212222222222-2222222222222222222333112212222222222222222322222221-111111111111---------------2-2---------------2222112-1-1122223435256521111----------12322222222433--22222111--------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 129 STR:RPRED 90.2 SQ:SECSTR ccccHHHHHHHHHHHHcTTccHHHHHHHHTccHHHHHHHHHHHHHTTccccccccccGGGGTccEEEEEEEEEcTTcHHHHHHHHHTcTTEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHcTTEE############## DISOP:02AL 1-1,143-144| PSIPRED ccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEEEcHHHHcccEEEEEEEEEcHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEccHHHHHHHHHHHHcccccEEEEEEEEEEEEccc //