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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86796.1
DDBJ      :             DNA polymerase
Swiss-Prot:             

Homologs  Archaea  49/68 : Bacteria  362/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.18.1
:296 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   116->286 1ui0A PDBj 5e-22 32.9 %
:RPS:PDB   125->295 2d07A PDBj 3e-25 8.8 %
:RPS:SCOP  113->295 1l9gA  c.18.1.2 * 5e-30 27.2 %
:HMM:SCOP  106->296 1l9gA_ c.18.1.2 * 2.5e-48 38.3 %
:RPS:PFM   140->229 PF03167 * UDG 1e-08 31.1 %
:HMM:PFM   138->286 PF03167 * UDG 7.7e-31 30.5 141/150  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86796.1 GT:GENE AAK86796.1 GT:PRODUCT DNA polymerase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(982150..983040) GB:FROM 982150 GB:TO 983040 GB:DIRECTION - GB:PRODUCT DNA polymerase GB:PROTEIN_ID AAK86796.1 GB:DB_XREF GI:15156000 LENGTH 296 SQ:AASEQ MIAAHDLSPAELAALLHFHADAGVDWMLEEAPVDRFAEFAAARPMPGQDAATPARQAQSPADRRTDAPQRQAPGRSAPARGAPAAPAIQQNVAMPDEQAVSAARFAAESARSLGELRTALEGFNGCNLKNSARNTIFSEGDPASAIMVIGPMPDADDDREGTPFAGKTGQLLERMLAAIGLERSAIMIGNVVPWRPPGNRPPTQAEMDICRPFIERQIALAEPKHLLLLGNFTARFFFGGTGTIHTLRGQWRDVAAGHLILPALASLHPQELLNAPASKSLAWQDLLAFQTKITEG GT:EXON 1|1-296:0| SEG 67->87|apqrqapgrsapargapaapa| SEG 99->112|avsaarfaaesars| SEG 230->243|gnftarfffggtgt| BL:PDB:NREP 1 BL:PDB:REP 116->286|1ui0A|5e-22|32.9|167/192| RP:PDB:NREP 1 RP:PDB:REP 125->295|2d07A|3e-25|8.8|170/215| RP:PFM:NREP 1 RP:PFM:REP 140->229|PF03167|1e-08|31.1|90/147|UDG| HM:PFM:NREP 1 HM:PFM:REP 138->286|PF03167|7.7e-31|30.5|141/150|UDG| RP:SCP:NREP 1 RP:SCP:REP 113->295|1l9gA|5e-30|27.2|180/191|c.18.1.2| HM:SCP:REP 106->296|1l9gA_|2.5e-48|38.3|188/191|c.18.1.2|1/1|Uracil-DNA glycosylase-like| OP:NHOMO 518 OP:NHOMOORG 412 OP:PATTERN 111111111111111111111111111111-1--------------1-11111-11111112--1111 12211----------11--------1------12121-112-1-1-----------------1--1--1---------1111211111--------------------1----------------11-1111111111122111111-11---1111111111--111111111111111111-1111111------------------------------------------------------------------------------------------------------------------------------------1--1-1111111-1-1-111----11--1---2--1111111111111--112122111111212221222121211111111111-11111111321112223323332231111122222221122222222122321211111111111111111111111111111111-111111122221222111122222222111222121--11111------11-11121-111-------112221-1-1-1----------1-11111121222211----------------------11121---------------------------------2111--------------------------------------------------------------------------------------------------11111------------------------------------------------------------------------1-12122111------11--1111--------11--------------------------1111111111122 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 183 STR:RPRED 61.8 SQ:SECSTR ################################################################################################################HHHHHHHTTTTccccccccccEEccccccTTccEEEEEccccHHHHHHTcccccccccHHHHHHHHTTcccccccGGGGGGHHHEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHTcccccccccEEEEEEcTTcEEEEEccccTTccccGGTHHHHHHHHHHHHHHHT# DISOP:02AL 1-7, 48-84| PSIPRED ccccccccHHHHHHHHHHHHHccccHHHHHccHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccEEEccccccccEEEEEccccHHHHHcccccccHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHcccccHHHHccEEEEEcccccEEEEEEEEcHHHHHccHHHHHHHHHHHHHHHHHHHcc //