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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86803.1
DDBJ      :             electrotransfer ubiquinone oxidoreductase
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  354/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
c.3.1d.16.1d.58.1
:554 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->554 2gmhB PDBj e-157 54.5 %
:RPS:PDB   5->35 1chuA PDBj 1e-06 19.4 %
:RPS:PDB   16->350 3c96A PDBj 5e-37 15.0 %
:RPS:PDB   498->545 1bc6A PDBj 4e-06 22.7 %
:RPS:SCOP  16->96 2ivdA1  c.3.1.2 * 5e-10 28.9 %
:RPS:SCOP  215->310 2gmhA2  d.16.1.8 * 3e-32 60.4 %
:RPS:SCOP  455->554 2gmhA3  d.58.1.6 * 1e-20 62.0 %
:HMM:SCOP  8->454 2gmhA1 c.3.1.2 * 4.5e-56 32.1 %
:HMM:SCOP  455->554 2gmhA3 d.58.1.6 * 3.3e-30 44.0 %
:RPS:PFM   9->52 PF01946 * Thi4 5e-11 73.8 %
:RPS:PFM   424->511 PF05187 * ETF_QO 4e-29 62.5 %
:HMM:PFM   399->510 PF05187 * ETF_QO 5.6e-45 57.8 109/110  
:HMM:PFM   120->165 PF01266 * DAO 8.5e-06 37.8 45/358  
:HMM:PFM   11->58 PF01946 * Thi4 3.1e-09 43.5 46/230  
:BLT:SWISS 6->554 ETFD_DICDI e-162 54.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86803.1 GT:GENE AAK86803.1 GT:PRODUCT electrotransfer ubiquinone oxidoreductase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 989626..991290 GB:FROM 989626 GB:TO 991290 GB:DIRECTION + GB:PRODUCT electrotransfer ubiquinone oxidoreductase GB:PROTEIN_ID AAK86803.1 GB:DB_XREF GI:15156009 LENGTH 554 SQ:AASEQ MTEAMELPEREAMEFDVVIVGAGPAGLSAAIRLKQVEPELSVVVLEKGAEVGAHILSGAVVDPIGIDRLLPGWRKEEGHPFKTEVKDDQFMFLGPAGSIRLPNFMMPPLMNNHGNYIVSLGLVCRWLAEKAEALGVEIYPGFAATEVLYNDAGAVIGVATGDMGIEKNGEPGPAFTRGMELHGKYVLVGEGVRGSLAKQLIAKYDLSKDREPQKFGIGIKELWQVKPEHHRQGLVQHSFGWPLGFKTGGGSFLYHLEDNLVAVGFVVHLNYKNPYLYPFEEFQRFKTHPAIRDTFEGGKRISYGARAITEGGYQSVPKLTFPGGALIGCSAGFVNVPRIKGSHNAVLSGMLAAEKIAAALSAGRAHDEVVEIEAEWRDGDIGKDLKRVRNVKPLWSKFGTLVGVGLGGLDMWTNQLFGFSVFGTLKHGKTDAQSLEPASKHKPIAYPKPDGVLTFDRLSSVFLSSTNHEEDQPVHLQVKDMELQKRSEHDIYAGPSTRYCPAGVYEWVEKDGEEVYVINAQNCVHCKTCDIKDPNQNINWVPPQGGEGPVYANM GT:EXON 1|1-554:0| BL:SWS:NREP 1 BL:SWS:REP 6->554|ETFD_DICDI|e-162|54.0|541/606| SEG 352->362|aaekiaaalsa| SEG 399->409|gtlvgvglggl| BL:PDB:NREP 1 BL:PDB:REP 9->554|2gmhB|e-157|54.5|536/578| RP:PDB:NREP 3 RP:PDB:REP 5->35|1chuA|1e-06|19.4|31/478| RP:PDB:REP 16->350|3c96A|5e-37|15.0|314/381| RP:PDB:REP 498->545|1bc6A|4e-06|22.7|44/77| RP:PFM:NREP 2 RP:PFM:REP 9->52|PF01946|5e-11|73.8|42/80|Thi4| RP:PFM:REP 424->511|PF05187|4e-29|62.5|88/110|ETF_QO| HM:PFM:NREP 3 HM:PFM:REP 399->510|PF05187|5.6e-45|57.8|109/110|ETF_QO| HM:PFM:REP 120->165|PF01266|8.5e-06|37.8|45/358|DAO| HM:PFM:REP 11->58|PF01946|3.1e-09|43.5|46/230|Thi4| GO:PFM:NREP 3 GO:PFM GO:0009228|"GO:thiamin biosynthetic process"|PF01946|IPR002922| GO:PFM GO:0004174|"GO:electron-transferring-flavoprotein dehydrogenase activity"|PF05187|IPR007859| GO:PFM GO:0055114|"GO:oxidation reduction"|PF05187|IPR007859| RP:SCP:NREP 3 RP:SCP:REP 16->96|2ivdA1|5e-10|28.9|76/341|c.3.1.2| RP:SCP:REP 215->310|2gmhA2|3e-32|60.4|96/99|d.16.1.8| RP:SCP:REP 455->554|2gmhA3|1e-20|62.0|100/102|d.58.1.6| HM:SCP:REP 8->454|2gmhA1|4.5e-56|32.1|346/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 455->554|2gmhA3|3.3e-30|44.0|100/0|d.58.1.6|1/1|4Fe-4S ferredoxins| OP:NHOMO 761 OP:NHOMOORG 543 OP:PATTERN -------1---------111111--------------------------------------111---- -11------------------------------------------------------------1---------------131---------------------------------------------11-111111---11----1-------11-----------1-------------------------1--------------------------------------1----------------------------------------------------------------------------------------------------------------------------542221111------1----11111111132222111222221111111111111121121112111111234223222211111111111111111111112211123-----------------------------1111111111122223211111221311111124411111111141111132311111-111111111111---3221-1------1-----------1----1------------------------------1111-1111111-1111111311112132121-----1-------2-1-1--3333333332-3333333333333333331-------13231333332213113-2233332-----------------1111111111-1111---------------11111121114111111111111111-11-------------1-----12-1111111111111111--1------------------------------------------------1-11111- ----111-211-11111111111111111112111111111111111111111111111111111111111-11111111111111-1-11111111111141112-121222121211112112112-291-2121-11111111111111-111111123121331124-121111-----1111111111121113 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 554 STR:RPRED 100.0 SQ:SECSTR HHHHHccccTTcccEEEEEEcccHHHHHHHHHHHHHTTccEEEEEEcccccccccEcHHHHHHHHHTTcHHHHHHcTTTcEEHcEEEcEEEEEcTTccEEEEEEcGGGGTccccEEEEEHHHHHHHHHHHHHHHHTcEEEcEEEEEEEEETTEEEEEEEETTcTTcTTccEEEEEccEEEEEEcEEEEcccTTcHHHHHHcTTccccEEEEEEEEEEEEEEcccTTcccTTccEEEEEEccHHHHTTTcEEEEEEEEEEHHHHccccccccTTccccHHHHHHHHTTcccTTccHHHHHHTccEEEEEEEEEcccccccccTTEEEcTHHHHcccccTTcTHHHHHHHHHcccccTTccccTTcTccTTHHHHHHHHHHHHHTTTccHHHHHHHHHHHHHHHHHcccccGGGHHHHHHHHHHTHHHHHHTTccHHHHHHHHHHHHHccccHHHHHHTTccHHHHcHHHHHHccHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHcHHHHHcTTcHHHHHHHHccTTccTTccEEEEEEccccTcccccccc DISOP:02AL 1-10| PSIPRED ccccccccccccccccEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccccccccEEEcHHHHHHHcccccccccccccEEEEEEEEEEEcccccEEcccccccccccccccEEEEHHHHHHHHHHHHHHcccEEEEcEEEEEEEEcccccEEEEEEccccccccccccccccccEEEEEEEEEEEccccHHHHHHHHHHccccccccHHHHEEEEEEEEEccHHHccccEEEEEEEcccccccccEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHcHHHHHHcccccEEEEccEEEEcccccccccEEcccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccHHHHccHHHcccccccccccccccccccHHHHccccccccccccEEEccccccEEEccHHHcccEEEEcccEEEEEEEcccccEEEEEccccEEEcEEEEEcccccEEEEccccccccccccc //