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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86854.1
DDBJ      :             ABC transporter, substrate binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  140/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
c.1.19c.94.1
:347 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   36->339 2de3B PDBj 2e-16 12.2 %
:RPS:SCOP  16->272 1dioA  c.1.19.3 * 7e-10 11.7 %
:HMM:SCOP  34->265 1xs5A_ c.94.1.1 * 4.2e-30 26.7 %
:RPS:PFM   63->252 PF09084 * NMT1 4e-11 30.4 %
:HMM:PFM   49->263 PF09084 * NMT1 7.5e-45 32.1 209/216  
:BLT:SWISS 36->263 THI13_YEAST 2e-11 28.1 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86854.1 GT:GENE AAK86854.1 GT:PRODUCT ABC transporter, substrate binding protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1040042..1041085 GB:FROM 1040042 GB:TO 1041085 GB:DIRECTION + GB:PRODUCT ABC transporter, substrate binding protein GB:PROTEIN_ID AAK86854.1 GB:DB_XREF GI:15156070 LENGTH 347 SQ:AASEQ MILTRRLLSRTLAIAAIGAVAGFSLPATGAYAETPVKFTLDWKFEGPAAGFLLALDKGYFKAEGLDVTIDSGNGSVEAIPRVATGAYQMGFGDINSVMKFLDEDPSQKIKAVYMVYERPTFAVVGRKSLGVTGDPKSLEGKKLGAPPPDGAFAQWPAFKQVAGLDDSKIKIESIGFPVREPMLAKGDVDAVFGFAFSVILNLKKQGIADDDISTILMAEHGLNLYGNAVLVNTDFAEKNPEAVKGFLKALAKGFADSVKTPEEGVAAVLKRNETLDSAIELERLNMANSMNIKTPYVVENGMGGVDPARLAASLDTLKVSMGLKGNVKAEQVFDAAYLPPKEERMLP GT:EXON 1|1-347:0| BL:SWS:NREP 1 BL:SWS:REP 36->263|THI13_YEAST|2e-11|28.1|224/340| TM:NTM 1 TM:REGION 7->26| RP:PDB:NREP 1 RP:PDB:REP 36->339|2de3B|2e-16|12.2|294/347| RP:PFM:NREP 1 RP:PFM:REP 63->252|PF09084|4e-11|30.4|184/200|NMT1| HM:PFM:NREP 1 HM:PFM:REP 49->263|PF09084|7.5e-45|32.1|209/216|NMT1| RP:SCP:NREP 1 RP:SCP:REP 16->272|1dioA|7e-10|11.7|239/551|c.1.19.3| HM:SCP:REP 34->265|1xs5A_|4.2e-30|26.7|221/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 205 OP:NHOMOORG 155 OP:PATTERN -------------------------------------------------------------------- ----------1--------------1----------1----2-1-1--------1-----11--2----1-----------12-----------------------------------------------------22221---41-------11---------------------------------------1111111111111111-----111--11---------14-----------------------------------------------------1--1111-111111-------------1------------12-----------1------1-1-----------------------1---1111-------412113---21----------2---1------21-1221---31--151---22-11221-1---------------------------------------------------11-1--------------1----------1121-----1-3--31--53----1-1-------------11121-1--1---------------1-----1111-------------------11--1----1-----------------------------1---1--------1-----------------------------------------------------------------------------------------------1-2---------------------------------------11-------------------------------------------1------------------------------------------------1-111--- ---------------1--------------------------------111111---1--11----------1---3--1-------------------------------------------------------------------------------------1----------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 329 STR:RPRED 94.8 SQ:SECSTR ##########cEEEEHHHHHHHcHHHHHHHHccccccEEEEEEEcccccHHHHHHHTTHHHHTTEEEEEccGGGTTHHHHcccTTEEEEEcccHHHHHHHHHTTcTTcEEEEEEEEEcccEEEEEcTTccccccGGGGTTcEEEEcHHHHHHHHTccTTGHTTccGGGcEEEEcccTTTcccHHHHHHcccccHEEEEEHHHHHHHHTTTcEEcccGGGcGGGcEEEEEEEEHHHHHHcHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHTccHHHHHTTTcccEHHHcTTGGGcccccccHHHHHHHHHHHHHHHHTTcccccccHHHHccHHHHH######## DISOP:02AL 1-4, 6-7| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccHHHHHHHHHccHHHHcccEEEEEEccccHHHHHHHHcccEEEEEEcHHHHHHHHHccccccEEEEEEEEccccEEEEEEccccccccHHHHcccEEEEccccHHHHHHHHHHHHccccHHcEEEEEccHHHHHHHHHcccEEEEEEEcccHHHHHHHHccccccEEEEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHHHcccccccccHHHccccccccHHHHcccc //