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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86917.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  647/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
d.110.2d.58.29
:342 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   177->341 1w25A PDBj 2e-23 39.0 %
:RPS:PDB   52->116 2conA PDBj 2e-11 20.0 %
:RPS:PDB   103->305 3btaA PDBj 6e-50 8.5 %
:RPS:SCOP  32->176 1mc0A1  d.110.2.1 * 2e-09 9.7 %
:RPS:SCOP  184->338 1w25A3  d.58.29.2 * 1e-32 35.5 %
:HMM:SCOP  28->180 1mc0A2 d.110.2.1 * 5.8e-17 27.4 %
:HMM:SCOP  184->338 1w25A3 d.58.29.2 * 3.8e-51 46.1 %
:RPS:PFM   182->335 PF00990 * GGDEF 8e-30 48.1 %
:HMM:PFM   179->336 PF00990 * GGDEF 6.2e-46 47.5 158/161  
:HMM:PFM   32->156 PF01590 * GAF 1.4e-08 19.4 124/154  
:BLT:SWISS 167->337 Y1727_PSEAE 4e-31 40.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86917.2 GT:GENE AAK86917.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1101977..1103005 GB:FROM 1101977 GB:TO 1103005 GB:DIRECTION + GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK86917.2 GB:DB_XREF GI:159139916 LENGTH 342 SQ:AASEQ MGQAISRPDREVERLVAVRSVVAFKNAETDELRAISQLAQGVFDVARAAVHILDEDWLHIAEQAGLQFQECSRDIAICDRVVVTQNVLTVSDLSVHPEFGWLPYVKGSPELRSYAGAPIELEPGLVVGTFCLLDPNVREYSPAEIDNLRYFATLAGALLRLQKANFTMSLAARELRDAAMTDPLTGFYNRKALDAIVDLELGAALCERETFGVLYLDLDGFKAINDTLGHAAGDKVLVEAAARIRDVVRAEDTVVRMGGDEFAIFVPRPMSASVIGSLAERLLEAFRQPFHVEGEDVLARLSIGGAIAPQAGADRPTLLRSVDEALYQAKKSGRDRFVSRAL GT:EXON 1|1-342:0| BL:SWS:NREP 1 BL:SWS:REP 167->337|Y1727_PSEAE|4e-31|40.6|170/685| BL:PDB:NREP 1 BL:PDB:REP 177->341|1w25A|2e-23|39.0|164/454| RP:PDB:NREP 2 RP:PDB:REP 52->116|2conA|2e-11|20.0|65/79| RP:PDB:REP 103->305|3btaA|6e-50|8.5|201/1277| RP:PFM:NREP 1 RP:PFM:REP 182->335|PF00990|8e-30|48.1|154/160|GGDEF| HM:PFM:NREP 2 HM:PFM:REP 179->336|PF00990|6.2e-46|47.5|158/161|GGDEF| HM:PFM:REP 32->156|PF01590|1.4e-08|19.4|124/154|GAF| RP:SCP:NREP 2 RP:SCP:REP 32->176|1mc0A1|2e-09|9.7|145/187|d.110.2.1| RP:SCP:REP 184->338|1w25A3|1e-32|35.5|155/162|d.58.29.2| HM:SCP:REP 28->180|1mc0A2|5.8e-17|27.4|146/0|d.110.2.1|1/1|GAF domain-like| HM:SCP:REP 184->338|1w25A3|3.8e-51|46.1|154/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 8906 OP:NHOMOORG 663 OP:PATTERN ------------------------1----2-------------------------------------- GA48C--1111---26411-1I33-111111-C6667G75BFAWt----11-745-----C94-F4K7763---------C-68CK76-------------1----2111---------------11111111151CCC99111A5jUVIMN234EE1114--CLA2FFN4------------T7E549817B2888886782888888-33333888586E3II322233AC-1111111111111111111--21-------23------1-1------------------------------------------------5DB7I66656669594G675455859--7986BIGGD7758A622472--B396AA4-----27YSTA7IZRJTY4688478788I-aYRWWEWUBX51LRRSYZQZbeHFSHAGB392CEAB794--------DGG5-hDU11111111111111111111111-11111-A8HA4AA842IDEGGGE7776EETZ777727KRRCNFP-3NMJaJbKNY12n97TTXUKXZbM-------56GMlp4JSGJKPQ9iRMLO1KHLdGMGZR6666B665G675----------------TDHNE43cXHadYqJmUhplmnkgocjiiVhcbUVzs---CcHh------CGIC3L7EEEDEDDDFC-BEDFE9ADEDCCDDEEDDHEJECF--18489888888788897C676546A--E34444433444---R-2-2-HIHIGAnGl---------------989993A-1-HZTSRSYYYbdXWVWSUVa-----2---aOTTOXYWWWaaYrrNNPTQTPHIL1111--c2AA67DE--------517-------------------------984AA69666-1- ----1------------------------------------------------------------------------------------------1--------------------------------------------------------------2----4---------93----------1--8---129222- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 333 STR:RPRED 97.4 SQ:SECSTR #########cHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHTEEEEEEEcccccccEEEEccccccEEccccccccccccEEEEccccccccccccccccccccccccTTcccccEEEEEccccEEEEEEETTEEEEEEEccccGGGccccccccccccccccccTTTTccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHccccccTTccTTcccccGGGEEEEEcTTccEEEEEccEEEEEccccTTccEEEccccccccTTTccccccEEEEccccEEcEEccccGGGTcTTcccEccccccccTHHHHHHHHHHHHHHHTTTcccEEHHHH DISOP:02AL 1-4| PSIPRED ccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEEEEHHHHHHHHHcccccHHccccHHHHHHHHHcccEEEEEcHHHcccccccHHHHcccccEEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHccccHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHccEEEccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEcccc //