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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86918.2
DDBJ      :             dehydrogenase
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  202/915 : Eukaryota  28/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:308 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->181 1evjD PDBj 4e-11 32.7 %
:RPS:PDB   5->275 2bh9A PDBj 1e-24 14.4 %
:RPS:SCOP  1->171 1gcuA1  c.2.1.3 * 1e-21 17.8 %
:HMM:SCOP  3->171 1tltA1 c.2.1.3 * 1.8e-38 36.9 %
:RPS:PFM   5->113 PF01408 * GFO_IDH_MocA 7e-12 40.2 %
:HMM:PFM   5->112 PF01408 * GFO_IDH_MocA 1.3e-21 35.5 107/120  
:HMM:PFM   137->183 PF02894 * GFO_IDH_MocA_C 1e-05 26.1 46/115  
:BLT:SWISS 1->308 GAL_PSEFL 6e-67 43.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86918.2 GT:GENE AAK86918.2 GT:PRODUCT dehydrogenase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1103036..1103962) GB:FROM 1103036 GB:TO 1103962 GB:DIRECTION - GB:PRODUCT dehydrogenase GB:PROTEIN_ID AAK86918.2 GB:DB_XREF GI:159139917 LENGTH 308 SQ:AASEQ MSATKLAIVGVGKIVRDQHLPAIAGNPDFELICTASRHGTVDGVSSYGTIEAMLEAEPAINAVSLCMPPQYRYEAAYAALNAGKHVFLEKPPGATLSEVQDLARLADSKGLSLFASWHSRYAPAVEAAKAFLASTTIDSVHVIWKEDVRHWHPNQAWIWQAGGLGVFDPGINALSIITHILPRALFLTKATLEFPENRDAPIAADLHFSDVEKTPVHAEFDWRQTGKQSWDIVAETAAGRMVLSEGGAKLSINGEEKLSQPEREYPALYERFAEIIKAGRSDVDLAPLTHVADAFLLGRHKFVDSFYD GT:EXON 1|1-308:0| BL:SWS:NREP 1 BL:SWS:REP 1->308|GAL_PSEFL|6e-67|43.8|304/304| BL:PDB:NREP 1 BL:PDB:REP 7->181|1evjD|4e-11|32.7|168/338| RP:PDB:NREP 1 RP:PDB:REP 5->275|2bh9A|1e-24|14.4|271/489| RP:PFM:NREP 1 RP:PFM:REP 5->113|PF01408|7e-12|40.2|107/119|GFO_IDH_MocA| HM:PFM:NREP 2 HM:PFM:REP 5->112|PF01408|1.3e-21|35.5|107/120|GFO_IDH_MocA| HM:PFM:REP 137->183|PF02894|1e-05|26.1|46/115|GFO_IDH_MocA_C| GO:PFM:NREP 1 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01408|IPR000683| RP:SCP:NREP 1 RP:SCP:REP 1->171|1gcuA1|1e-21|17.8|163/174|c.2.1.3| HM:SCP:REP 3->171|1tltA1|1.8e-38|36.9|160/167|c.2.1.3|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 294 OP:NHOMOORG 242 OP:PATTERN --------1111111-----------------111--------------------1--1--------- -------------------------------------1--------3--21-11---1-------2-1----------------------1----------------2-1-----------------------------1------111112---111--11111----12-111---1-11--1----1-1-----------------32--------11-1-1-------5111111111111111-------------------------------------------------------------------------------1---------------------------------1-------1-----1211------1-111-1------11111111111-11111--113--222212133312-------1--------------------------------------------------------1------1111111----11-1-----111-------11-1-------1---------1----------1--------------------------------1-1---------------------------------------------------------------------------211221112122-22121122212121212211-1-----111-----1---1---11--11-1--111111111111----------------111111-------------------------------------111-------------------------111111111------------------------1--------------------------------1---1- -------------2------1--1---------1-1---------------2111---------11-1--1----11111-------1--22--2111----------1-----------------------------------------1--1--------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 308 STR:RPRED 100.0 SQ:SECSTR cTTccEEEEEEEcccccHHHHGGGccccGGGHHHHHHHcccccHHHHHHHHHHHHTTTcEEEEEEcccTTcHHHHHHHHHHHcEEEEEcccccccHHHHHHHHHHHTTTccGGGEEEccGGGGcHHHHHHHHHHHccGGGcTTccTEEcccccTTcHHHHTTTHHHHHTTTTHHHHHHHHHHccccccccHHHHHHHHHHHHTTcccccGGGEEEEEEEccTTcccTTcccGGGcTTccTTcccccEEEEEcccTTTTTcEEEEEccccccEEEEHHHHTTccTTcccccHHHHHTTccHHHHHHHHH DISOP:02AL 307-309| PSIPRED cccEEEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHccccccEEEEccccHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccEEEEHHHHHHHHHHHHccccEEEEEEEEEccccccccEEEEEEEccccEEEEEEEEEccccccccEEEEEEccEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccc //