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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK86987.1
DDBJ      :             DNA-directed RNA polymerase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  11/915 : Eukaryota  178/199 : Viruses  10/175   --->[See Alignment]
e.8.1
:863 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->863 1s76D PDBj e-136 41.3 %
:RPS:PDB   243->858 1aroP PDBj e-116 34.4 %
:RPS:SCOP  25->858 1aroP  e.8.1.3 * 0.0 39.1 %
:HMM:SCOP  22->863 1cezA_ e.8.1.3 * 4.3e-230 38.0 %
:RPS:PFM   448->862 PF00940 * RNA_pol 7e-79 44.2 %
:HMM:PFM   447->862 PF00940 * RNA_pol 7.3e-124 43.2 384/408  
:BLT:SWISS 27->863 RPOL_BPT7 e-137 40.0 %
:PROS 620->634|PS00489|RNA_POL_PHAGE_2
:PROS 527->538|PS00900|RNA_POL_PHAGE_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86987.1 GT:GENE AAK86987.1 GT:PRODUCT DNA-directed RNA polymerase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1176283..1178874 GB:FROM 1176283 GB:TO 1178874 GB:DIRECTION + GB:PRODUCT DNA-directed RNA polymerase GB:PROTEIN_ID AAK86987.1 GB:DB_XREF GI:15156227 LENGTH 863 SQ:AASEQ MIELDTTNELFLAAHGCLPTEHEAWEKQIALEEEMRSAGIARFEKGLEKNREKNAEASNLSSRRMIIHAHAQVIAGLEAFLAEASSGKAGKKHTAVAYLKDADLDVVAHLTLRNLFDYVSMRMKLTPLSIRLAAMVEDELFFNAFKGHDKDAYEYARKKISEQTHNAVHQKRAMTKHAKHKGAEWQDWSQDVKAKVGLKLIEIAVEQTGLFEIVRQSEGAHNTNIYVVATKETLDWLATENSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSGRVRNLRLIKTGNRQYLMDLESVDMPKVYHSINAMQNTAWSINHRVYEVMASLWDNQSTLACIPQADDMPLPEKPMWLAPEMKREDMSPEQLEEFSRWKSERTTIYEANARAVSKRLAFSRMLGVATRFKDEEEFYFPHQMDFRGRVYAVPLFLNPQGDDASHGLLQFANSVPITNEEGADWLAIHGAGLWGVDKCSMNERVEWVMANQREILASAENPYDNRFWLTAEKPWQALAFCFEWQGYVAEGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLVPSDKPNDIYATVASVLIAKLRDIAAACPEDTTTKEVKDKETKENKTIVVESDGSMARKWLAYGITRKVTKRPVMTLAYGASEFGFREQVFTDTVTPWKQAAGEAFPFEGTGFAAASFLGLLIWDCVGEVVVAAAGAMDWLQKVAKIAAKESLPVIWNTPAGLKVMQEYTTSEQKRLELTFQKVRLQLSIDVASKKIDKRKQGSGISPNWVHSMDAAHMQLTVSRCHDEGIRSFSLIHDSYGTHAGNAWAMAQFLREEFVKMYGDHDVLAEFGREITAMLPEGTQLPPLPEKGSLDLSQVLESAFFFA GT:EXON 1|1-863:0| BL:SWS:NREP 1 BL:SWS:REP 27->863|RPOL_BPT7|e-137|40.0|814/883| PROS 620->634|PS00489|RNA_POL_PHAGE_2|PDOC00410| PROS 527->538|PS00900|RNA_POL_PHAGE_1|PDOC00410| TM:NTM 1 TM:REGION 670->692| SEG 585->602|edtttkevkdketkenkt| SEG 682->692|vgevvvaaaga| BL:PDB:NREP 1 BL:PDB:REP 27->863|1s76D|e-136|41.3|779/829| RP:PDB:NREP 1 RP:PDB:REP 243->858|1aroP|e-116|34.4|587/774| RP:PFM:NREP 1 RP:PFM:REP 448->862|PF00940|7e-79|44.2|380/394|RNA_pol| HM:PFM:NREP 1 HM:PFM:REP 447->862|PF00940|7.3e-124|43.2|384/408|RNA_pol| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00940|IPR002092| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00940|IPR002092| GO:PFM GO:0006350|"GO:transcription"|PF00940|IPR002092| RP:SCP:NREP 1 RP:SCP:REP 25->858|1aroP|0.0|39.1|729/774|e.8.1.3| HM:SCP:REP 22->863|1cezA_|4.3e-230|38.0|818/878|e.8.1.3|1/1|DNA/RNA polymerases| OP:NHOMO 262 OP:NHOMOORG 199 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------11---------1--------------------------------------------------------------------------------------1----------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------11--1-----------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------- 11--111-311-11211111111111111111111111111111111211111111111111122111-21121211-1112222211-13111112111111111-111111121-111-1111111-2B1-112-1-11111--11-----2111111111112211232231111181111132371411121111 ------1-----------------------------------------1-1----------11-111-1---------------------------------------------------------------------------------------------------1------ STR:NPRED 861 STR:RPRED 99.8 SQ:SECSTR #cHHHHccHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHTccTHHHHHHccHcTTHHHHHHHHHHHHHHHHHHHccccccHHHHHTTcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHTTcccHHHHHHHHHTccccccccHHHcccccccTTccTTTTccccccccccHHHHHHHHHHHHHHcTTcccEEEEEEcTTcHHTTccTTTcEEEEEEcHHHHcccccccHHHHHHHHHHHHHHHHHHcccEEEEccccEEEEEcHHHHHHHHHTccccGGGGccccccccccccccccccccccccccccccccccccccHHHHHTcTTcccHHHHHHHHHEEEcHHHHHHHHHHTcHccTTcHHHHHHHHHHHHHHHHHTcccccccccEEEcccccEEEccccccccccHHHHHHEEEcccEEccHHHHHHHHHHHHHHHHTcccccHHHHHHHHHTTHHHHHHTTcTTTTccTGGGccccHHHHHHHHHHHHHHHHcTTcEEccccccccccccHHHHHHHHTcHHHHTTcccccccccccHHHHHHHHHHHHHHHHHTcccccccccccHcccccEEcccccccccccTTHHHHHcccTTTccTTTTccccccTTHHHHHHHHHHTTHH#HHTTTccTTcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHTcccccEEEEcTTccEEEEccEEccccccccccccccccccccccccEEcHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTTTccccEEccccEEccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTTccTTTTccccccccccccGGGcccccccc DISOP:02AL 1-4, 85-90, 157-166, 173-183| PSIPRED cccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHcccccccccEEEEcccHHHHHHHccHHHHcEEccccccEEEcccccccccccEEEEcccEEEEEcccccHHHHHHcccccHHHHHHHHHHHHcccHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccEEEcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEEEEcccccHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEEEEEccccEEEEEEEEEEEEEEEcccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccEEEEHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccHHHHHccccccc //