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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87004.2
DDBJ      :             ABC transporter, substrate binding protein
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  514/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:497 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   41->480 1uqwA PDBj 7e-34 29.9 %
:RPS:PDB   54->495 3dp8B PDBj 8e-80 25.0 %
:RPS:SCOP  41->497 1uqwA  c.94.1.1 * 7e-79 25.9 %
:HMM:SCOP  38->499 1jetA_ c.94.1.1 * 1e-110 34.2 %
:RPS:PFM   70->409 PF00496 * SBP_bac_5 3e-41 35.1 %
:HMM:PFM   67->417 PF00496 * SBP_bac_5 1.5e-82 36.6 347/372  
:BLT:SWISS 41->480 GSIB_SHIDS 4e-36 28.7 %
:PROS 71->92|PS01040|SBP_BACTERIAL_5
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87004.2 GT:GENE AAK87004.2 GT:PRODUCT ABC transporter, substrate binding protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1194886..1196379 GB:FROM 1194886 GB:TO 1196379 GB:DIRECTION + GB:PRODUCT ABC transporter, substrate binding protein GB:PROTEIN_ID AAK87004.2 GB:DB_XREF GI:159139957 LENGTH 497 SQ:AASEQ MIKHALLTTCAIAGAFGANAANAGTVTYDDNYAVKAAWQMASDDSTLGMRVGCYEGLVRIGFDMRLEASLAESWKQTEPKVWEFKLRKGVKFQNGEDFNAAAAVNALTLLLKASVPARAFSPKQIAGVEAVGDDVVKVTTIEPSVLLPAQLASPATAILAPSAYKDGKINPIGTCTGPFEITEVDPNQYMVMKANHGYWGGMPKLDGGRVNFVPDADTRATQIRTGEVQISRLVPPWSIKTIESTKGVKVAAISVPRITELLLNNSRPPFKDKKVREAVRAAIDAAGIASSIYEEKVKSASMPFAPGQPWAAEEPTSTYDVAKAKSLLKEAGIAPGSLKVTILAYTMKTELKDVAAIIQAQLEEIGIKVDVRVAEYSAIEPDLLAGNFDMVLLSRGYATDVIEPAGYLNADYSCTGTYNISHYCNEETDKLIKAAYAEVEPAKRYAIYGQIAKKIYDDAVSVFLVHETVFDAYSEKLENFRPHPINYFVLTKELSIK GT:EXON 1|1-497:0| BL:SWS:NREP 1 BL:SWS:REP 41->480|GSIB_SHIDS|4e-36|28.7|435/512| PROS 71->92|PS01040|SBP_BACTERIAL_5|PDOC00799| SEG 11->24|aiagafganaanag| SEG 100->113|aaaavnaltlllka| SEG 278->292|avraaidaagiassi| BL:PDB:NREP 1 BL:PDB:REP 41->480|1uqwA|7e-34|29.9|428/478| RP:PDB:NREP 1 RP:PDB:REP 54->495|3dp8B|8e-80|25.0|440/497| RP:PFM:NREP 1 RP:PFM:REP 70->409|PF00496|3e-41|35.1|336/366|SBP_bac_5| HM:PFM:NREP 1 HM:PFM:REP 67->417|PF00496|1.5e-82|36.6|347/372|SBP_bac_5| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF00496|IPR000914| GO:PFM GO:0006810|"GO:transport"|PF00496|IPR000914| RP:SCP:NREP 1 RP:SCP:REP 41->497|1uqwA|7e-79|25.9|451/487|c.94.1.1| HM:SCP:REP 38->499|1jetA_|1e-110|34.2|459/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 1941 OP:NHOMOORG 546 OP:PATTERN 22--11----------1-1111-111122-22-------------2-32-A62-2121--1---3--- 11---121111-2--------1---5------22221648-31532-1-32-33211---22--436155-1222411111-2----------------------1----------------------------1--113-11-46----11---------------11-1------------914112211113333323222332229844412241-375--111111E4-22222222222222111-1--------------------------111-111---------------------------2----------912133323432311222111112-3-8--1135531--51-133-17211-----152152-9BH--352-6-5658678476H-22721637IK--VJJJ8A8IGCKLE4---2288688498--------1111---3-------------------------------2---A987954455532222448922221334D6497--335--4223-A4BM-2--21131-----------1-114-31231232231111111211-----1111111------11-111111112-11--322111111121111111111111121111---1---------77E73966546666756-5666666666566566663778983333323343333343433A55544462-322222222222---1-----------4276661-21111-4--2------1-113-5555454A44354-AAB----------22225555523422-----------------111------------2---------------------------1111114111-2- --------------------------------------------------------------------------------------------------------------------------------------------------------------1----1---------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 459 STR:RPRED 92.4 SQ:SECSTR ######################################GGcccHHHHHHHHHHccccEEEcTTccEEEccEEEEEEcTccEEEEEEccccccTTcccccHHHHHHHHHHHHTTGGGTTcHHHHHEEEEEEccccEEEEEEccccTTHHHHHTcccccccccGGGcccccTTcccccccEEEEEEETTTEEEEEEcTTcccccccccEEEEEEcccHHHHHHHHHTTcccEEEEccHHHHHHHHTcTTcEEEEccccEEEEEEEcTTcTTTTcHHHHHHHHHHccHHHHHHTTTccccccccccccTTcTTccccccccccHHHHHHHHHHTTccccTcEEEEEEETTcHHHHHHHHHHHHHHHTTTcEEEEEEEcHHHHHHHHHHTcccEEEEEcccTTTccTTHHHHHGGGcccHHHTTTcTTHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHTTcEEEEEEEcEEEEEcGGGccccccccTTcccGGGccEc PSIPRED ccHHHHHHHHHHHHHcccccccccEEEEccccccccccccccccHHHHHHHHHHHHHEEEcccccEEEEEEEEEEEEcccEEEEEEccccEEcccccccHHHHHHHHHHHHccccccccccHHHHccEEEccccEEEEEEccccHHHHHHHHccccccccHHHHccccccccccccccEEEEEEEcccEEEEEEccccccccccEEEEEEEEEccHHHHHHHHHccccEEEccccHHHHHHHHccccEEEEEEccccEEEEEEEccccccccHHHHHHHHHHccHHHHHHHHHcccEEEEccccccccccccccccccccHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEcccEEEEEccccccccccEEEEc //