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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87020.1
DDBJ      :             DNA photolyase
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  472/915 : Eukaryota  141/199 : Viruses  0/175   --->[See Alignment]
a.99.1c.28.1
:479 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->459 1u3cA PDBj 3e-84 40.8 %
:RPS:PDB   8->461 1dnpA PDBj e-112 34.9 %
:RPS:SCOP  9->184 1u3cA2  c.28.1.1 * 1e-26 33.1 %
:RPS:SCOP  204->461 1u3cA1  a.99.1.1 * e-100 43.8 %
:HMM:SCOP  6->208 1owlA2 c.28.1.1 * 3.6e-57 39.2 %
:HMM:SCOP  197->472 1np7A1 a.99.1.1 * 2.1e-113 54.5 %
:RPS:PFM   8->169 PF00875 * DNA_photolyase 4e-25 40.1 %
:RPS:PFM   207->461 PF03441 * FAD_binding_7 1e-68 57.9 %
:HMM:PFM   206->475 PF03441 * FAD_binding_7 6.3e-115 54.8 270/277  
:HMM:PFM   8->163 PF00875 * DNA_photolyase 2.5e-53 42.9 156/166  
:BLT:SWISS 9->459 CRY1_ARATH 1e-83 40.8 %
:PROS 323->335|PS00394|DNA_PHOTOLYASES_1_1
:PROS 343->362|PS00691|DNA_PHOTOLYASES_1_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87020.1 GT:GENE AAK87020.1 GT:PRODUCT DNA photolyase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1212113..1213552) GB:FROM 1212113 GB:TO 1213552 GB:DIRECTION - GB:PRODUCT DNA photolyase GB:PROTEIN_ID AAK87020.1 GB:DB_XREF GI:15156266 LENGTH 479 SQ:AASEQ MSLKTAPVIVWFRKDLRLSDNLALLAAVEHGGPVIPVYIREKSAGPLGGAQEWWLHHSLAALSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDDGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPKSLTAPKVWPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRDFPAKPATSLLSPHLAAGEISPAAVWHATKGLSRHIASNDISRFRKEIVWREFCYHLLFHFPELGEKNWNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKARERALAAYAAVKKTT GT:EXON 1|1-479:0| BL:SWS:NREP 1 BL:SWS:REP 9->459|CRY1_ARATH|1e-83|40.8|439/681| PROS 323->335|PS00394|DNA_PHOTOLYASES_1_1|PDOC00331| PROS 343->362|PS00691|DNA_PHOTOLYASES_1_2|PDOC00331| SEG 55->66|lhhslaalsssl| SEG 464->474|areralaayaa| BL:PDB:NREP 1 BL:PDB:REP 9->459|1u3cA|3e-84|40.8|439/485| RP:PDB:NREP 1 RP:PDB:REP 8->461|1dnpA|e-112|34.9|441/469| RP:PFM:NREP 2 RP:PFM:REP 8->169|PF00875|4e-25|40.1|162/168|DNA_photolyase| RP:PFM:REP 207->461|PF03441|1e-68|57.9|242/252|FAD_binding_7| HM:PFM:NREP 2 HM:PFM:REP 206->475|PF03441|6.3e-115|54.8|270/277|FAD_binding_7| HM:PFM:REP 8->163|PF00875|2.5e-53|42.9|156/166|DNA_photolyase| GO:PFM:NREP 4 GO:PFM GO:0003913|"GO:DNA photolyase activity"|PF00875|IPR006050| GO:PFM GO:0006281|"GO:DNA repair"|PF00875|IPR006050| GO:PFM GO:0003913|"GO:DNA photolyase activity"|PF03441|IPR005101| GO:PFM GO:0006281|"GO:DNA repair"|PF03441|IPR005101| RP:SCP:NREP 2 RP:SCP:REP 9->184|1u3cA2|1e-26|33.1|175/185|c.28.1.1| RP:SCP:REP 204->461|1u3cA1|e-100|43.8|258/300|a.99.1.1| HM:SCP:REP 6->208|1owlA2|3.6e-57|39.2|199/0|c.28.1.1|1/1|Cryptochrome/photolyase, N-terminal domain| HM:SCP:REP 197->472|1np7A1|2.1e-113|54.5|275/279|a.99.1.1|1/1|Cryptochrome/photolyase FAD-binding domain| OP:NHOMO 1064 OP:NHOMOORG 633 OP:PATTERN ------1111111111--------32233223-----------------1-----------1------ ---11-11111----11----1--11-----11111111111-11----1211111-3----1-1-11211-------------------------1----132212232--------------1---1-----1122322---1112212222222333333222322322--2233-32-3---111---1-1111111--111111----1-11------221111111--11111111111111-111-1-------------------11-------1-----------------1111111111111-------------------------------------------------------------11111-------1121--111111----------1----------111-111-1-111--1112133-1111221222222222111--11--------1--1--11-------------221-111----11111111111221111111111111111111-3111111-11-111-1221111-1111----111-------------------------------1-------------------11-----111231123231111112-111111--1-1----111-1-111-1111111111111111-111111111111111111111111--111111111111111111111111111111111111111--1111-111111-1212---------------11111-111111111111111111111112111-22-11111-33333322111111111111------1---------------------------1---------------1-1--------1- ------2-422----444211121211------111----------22333333333--222-11-11----1--111112--------111411----3224111--926B777A32-21122332315E21324212-21232222222112283461---34423341--847444O4234555764555633435 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 461 STR:RPRED 96.2 SQ:SECSTR HGGGcEEEEEEcccccccTTcHHHHHHcccTTEEEEEEEEcHHHTTccHHHHHHHHHHHHHHHHHHHHTTccEEEEEccHHHHHHHHHHHHTccEEEEEccccHHHHHHHHHHHHHcTTTTcEEEEEcccccccTTccccTTccccccHHHHHHHHHTcccHHHHTccccccccccccTcTcccccccccccccccccccTTTccccHHHHHHHHHHHHHTHHHHHHHHTTcTTcccccccHHHHHHTcccHHHHHHHHHHHGGGGGTcTTHHHHHHHHHHHHHHHHHHHcGGGGGTcccGGGGGccccccHHHHHHHHHTccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHTccccHHHHHHHHHTTcTTccHHHHHHHHHHHTTccTTcccTTccccHHHHHHHHTTTcHHHHHHcGGGTTccTTGGGcHHHHHHHHHHHTTTTcccccccccccH################## DISOP:02AL 1-5, 8-9, 477-479| PSIPRED cccccccEEEEEcccccccccHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHcccEEEEEccEEEEcHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHccccHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHcccccccccEEEcccHHHHHHccccccHHHHHHHHHHHcccHHHcccHHcccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcc //