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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87052.2
DDBJ      :             GGDEF family protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  653/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
d.58.29
:415 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   215->375 1w25A PDBj 7e-22 36.0 %
:RPS:PDB   198->377 3breA PDBj 1e-33 32.2 %
:RPS:SCOP  221->377 1w25A3  d.58.29.2 * 3e-32 34.4 %
:HMM:SCOP  221->380 1w25A3 d.58.29.2 * 2.5e-46 37.5 %
:RPS:PFM   219->372 PF00990 * GGDEF 1e-24 40.3 %
:HMM:PFM   216->373 PF00990 * GGDEF 2.7e-41 40.5 158/161  
:BLT:SWISS 219->374 YNEF_ECOLI 1e-28 41.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87052.2 GT:GENE AAK87052.2 GT:PRODUCT GGDEF family protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1244567..1245814) GB:FROM 1244567 GB:TO 1245814 GB:DIRECTION - GB:PRODUCT GGDEF family protein GB:PROTEIN_ID AAK87052.2 GB:DB_XREF GI:159139978 LENGTH 415 SQ:AASEQ MLDAKTSTLLWAAETFTLAVLLGTLWLHRPSRRHNLYFAAGFLATGFGTVMVALRGDISSFLSIQVGNTLALSAFGFWLAGLLSLEQRKLGGWIAIPALLWIAGMFVPSVPEDMVARILLYHASAATGYFMLAGVLLGSRARASRSRKVLATILILQAFAGAIVASIVIPANAAVPNAIPMTSALSISGMLGFTAIIMISAKIIMEDTEIRLHRLAMTDHLTGVLNRRGLLEEFEHIKKRSHGSDRYVALVLFDIDHFKKINDRYGHQSGDAVLVHFCNIAQRVIGERGLFVRMGGEEFALVAEVESPSSTVTLAEAIRSNLRLSKITARNEAIKVTTSVGISEAMIKDADLSVMMTEADRALYAAKKAGRNRTVIHVNSANVVVPAPDRDENPMDNNADRQVAALNRISAIASR GT:EXON 1|1-415:0| BL:SWS:NREP 1 BL:SWS:REP 219->374|YNEF_ECOLI|1e-28|41.2|153/315| TM:NTM 6 TM:REGION 8->30| TM:REGION 38->60| TM:REGION 64->86| TM:REGION 90->112| TM:REGION 151->173| TM:REGION 187->209| SEG 139->147|srarasrsr| SEG 167->180|ivipanaavpnaip| BL:PDB:NREP 1 BL:PDB:REP 215->375|1w25A|7e-22|36.0|161/454| RP:PDB:NREP 1 RP:PDB:REP 198->377|3breA|1e-33|32.2|180/322| RP:PFM:NREP 1 RP:PFM:REP 219->372|PF00990|1e-24|40.3|149/160|GGDEF| HM:PFM:NREP 1 HM:PFM:REP 216->373|PF00990|2.7e-41|40.5|158/161|GGDEF| RP:SCP:NREP 1 RP:SCP:REP 221->377|1w25A3|3e-32|34.4|157/162|d.58.29.2| HM:SCP:REP 221->380|1w25A3|2.5e-46|37.5|160/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 8335 OP:NHOMOORG 661 OP:PATTERN -------------------------------------------------------------------- G9166---111---36211-1E11-111111-C5557F748B8Nd-------644-----992-92E5643---------C167BJ66--------------------1----------------11111111151BBB8911194iQSEJJ123EE---2--8H9-EEJ4------------O8B548616B2666665672766776-23333677487D2FJ333333AE11111111111111111111-121-------3311-1-11111-----------------------------------------------49A7G888776676A4J445455658--7B858IHFC6757A622462--9396883-----17URT85GXPHSV4699489789J-VRKQO8QOAT52JOOOXVPWZdGDPF6E9292CC9A774--------CCC3-dAQ11111111111111111111111-11111-A7G83BA842HDFGIGE7776EESY888828JSPCMFQ-3NMHVHZJLT12l97URTUHXZYL-------56ELhm4IQGJHMP8lUKIL1KHKXFNEYO6776A665F776----------------TCKOD43aYHYcXpKiSfohgiggnbjggVdcbWUwn---BTCf------CFJC3K7EEEDEDDDFC-CEDFE9ADEDDCDDEEDDFDHDDF--18388888777787886C786546A--E34444433444---R-1-2-FHGGFAmEn---------------8788829-1-HZRQPQZXYXdZWWVRUPX-----2---WNTTSZZYYXaaVpoNPLMMMJEFH1111--Y27766DD11111111617-------------------------9738979767-1- ----1---------------------------------------------------------------------------------------------------------------------------------------------------------2----5---------72----------1--8-----7---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 210 STR:RPRED 50.6 SQ:SECSTR ######################################################################################################################################################################################cccGGGTcccHHHHHHHHHHHHHHHHHHHHHHHHHccTTTccccHHHHHHHHHHHHHHHHHHTccEEEEEEEETTHHHHHHHHcHHHHHHHHHHHHHHHTTcccTTcEEEEEETTEEEEEEETccHHHHHHHHHHHHHHHHTTcEccccTTEEccEEEEEEEEccccccTHHHHHHHHHHHHHHHTTTcccEEEEHHHHHHHHTTTTccc####################### DISOP:02AL 383-395,413-416| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHHHccEEcccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccc //